Literature DB >> 15338625

Detecting highly conserved regions of the human genome by multispecies sequence comparisons.

E H Margulies1, E D Green.   

Abstract

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Year:  2003        PMID： 15338625     DOI： 10.1101/sqb.2003.68.255

Source DB:  PubMed          Journal:  Cold Spring Harb Symp Quant Biol        ISSN： 0091-7451


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  8 in total

1.  An intermediate grade of finished genomic sequence suitable for comparative analyses.

Authors:  Robert W Blakesley; Nancy F Hansen; James C Mullikin; Pamela J Thomas; Jennifer C McDowell; Baishali Maskeri; Alice C Young; Beatrice Benjamin; Shelise Y Brooks; Bradley I Coleman; Jyoti Gupta; Shi-Ling Ho; Eric M Karlins; Quino L Maduro; Sirintorn Stantripop; Cyrus Tsurgeon; Jennifer L Vogt; Michelle A Walker; Catherine A Masiello; Xiaobin Guan; Gerard G Bouffard; Eric D Green
Journal:  Genome Res       Date:  2004-10-12       Impact factor: 9.043

2.  An evolutionary constraint: strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules.

Authors:  R Andrew Cameron; Suk Hen Chow; Kevin Berney; Tsz-Yeung Chiu; Qiu-Autumn Yuan; Alexander Krämer; Argelia Helguero; Andrew Ransick; Mirong Yun; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-08       Impact factor: 11.205

3.  HLA-E, HLA-F, and HLA-G polymorphism: genomic sequence defines haplotype structure and variation spanning the nonclassical class I genes.

Authors:  Chul-Woo Pyo; Luke M Williams; Yuki Moore; Hironobu Hyodo; Shuying Sue Li; Lue Ping Zhao; Noriko Sageshima; Akiko Ishitani; Daniel E Geraghty
Journal:  Immunogenetics       Date:  2006-03-29       Impact factor: 2.846

4.  Comparative sequencing provides insights about the structure and conservation of marsupial and monotreme genomes.

Authors:  Elliott H Margulies; Valerie V B Maduro; Pamela J Thomas; Jeffery P Tomkins; Chris T Amemiya; Meizhong Luo; Eric D Green
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-17       Impact factor: 11.205

5.  An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing.

Authors:  Elliott H Margulies; Jade P Vinson; Webb Miller; David B Jaffe; Kerstin Lindblad-Toh; Jean L Chang; Eric D Green; Eric S Lander; James C Mullikin; Michele Clamp
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-18       Impact factor: 11.205

6.  Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.

Authors:  Elliott H Margulies; Gregory M Cooper; George Asimenos; Daryl J Thomas; Colin N Dewey; Adam Siepel; Ewan Birney; Damian Keefe; Ariel S Schwartz; Minmei Hou; James Taylor; Sergey Nikolaev; Juan I Montoya-Burgos; Ari Löytynoja; Simon Whelan; Fabio Pardi; Tim Massingham; James B Brown; Peter Bickel; Ian Holmes; James C Mullikin; Abel Ureta-Vidal; Benedict Paten; Eric A Stone; Kate R Rosenbloom; W James Kent; Gerard G Bouffard; Xiaobin Guan; Nancy F Hansen; Jacquelyn R Idol; Valerie V B Maduro; Baishali Maskeri; Jennifer C McDowell; Morgan Park; Pamela J Thomas; Alice C Young; Robert W Blakesley; Donna M Muzny; Erica Sodergren; David A Wheeler; Kim C Worley; Huaiyang Jiang; George M Weinstock; Richard A Gibbs; Tina Graves; Robert Fulton; Elaine R Mardis; Richard K Wilson; Michele Clamp; James Cuff; Sante Gnerre; David B Jaffe; Jean L Chang; Kerstin Lindblad-Toh; Eric S Lander; Angie Hinrichs; Heather Trumbower; Hiram Clawson; Ann Zweig; Robert M Kuhn; Galt Barber; Rachel Harte; Donna Karolchik; Matthew A Field; Richard A Moore; Carrie A Matthewson; Jacqueline E Schein; Marco A Marra; Stylianos E Antonarakis; Serafim Batzoglou; Nick Goldman; Ross Hardison; David Haussler; Webb Miller; Lior Pachter; Eric D Green; Arend Sidow
Journal:  Genome Res       Date:  2007-06       Impact factor: 9.043

Review 7.  Implications of chimaeric non-co-linear transcripts.

Authors:  Thomas R Gingeras
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

8.  CONDOR: a database resource of developmentally associated conserved non-coding elements.

Authors:  Adam Woolfe; Debbie K Goode; Julie Cooke; Heather Callaway; Sarah Smith; Phil Snell; Gayle K McEwen; Greg Elgar
Journal:  BMC Dev Biol       Date:  2007-08-30       Impact factor: 1.978
  8 in total

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