Literature DB >> 15338623

The Genome Knowledgebase: a resource for biologists and bioinformaticists.

G Joshi-Tope1, I Vastrik, G R Gopinath, L Matthews, E Schmidt, M Gillespie, P D'Eustachio, B Jassal, S Lewis, G Wu, E Birney, L Stein.   

Abstract

Mesh：

Year:  2003        PMID： 15338623     DOI： 10.1101/sqb.2003.68.237

Source DB:  PubMed          Journal:  Cold Spring Harb Symp Quant Biol        ISSN： 0091-7451


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  25 in total

1.  Pathway-based variant enrichment analysis on the example of dilated cardiomyopathy.

Authors:  Christina Backes; Benjamin Meder; Alan Lai; Monika Stoll; Frank Rühle; Hugo A Katus; Andreas Keller
Journal:  Hum Genet       Date:  2015-11-07       Impact factor: 4.132

2.  Gene expression patterns define key transcriptional events in cell-cycle regulation by cAMP and protein kinase A.

Authors:  Alexander C Zambon; Lingzhi Zhang; Simon Minovitsky; Joan R Kanter; Shyam Prabhakar; Nathan Salomonis; Karen Vranizan; Inna Dubchak; Bruce R Conklin; Paul A Insel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-06       Impact factor: 11.205

3.  Arabidopsis reactome: a foundation knowledgebase for plant systems biology.

Authors:  Nicolas Tsesmetzis; Matthew Couchman; Janet Higgins; Alison Smith; John H Doonan; Georg J Seifert; Esther E Schmidt; Imre Vastrik; Ewan Birney; Guanming Wu; Peter D'Eustachio; Lincoln D Stein; Richard J Morris; Michael W Bevan; Sean V Walsh
Journal:  Plant Cell       Date:  2008-06-30       Impact factor: 11.277

4.  Network-based pathway enrichment analysis with incomplete network information.

Authors:  Jing Ma; Ali Shojaie; George Michailidis
Journal:  Bioinformatics       Date:  2016-06-29       Impact factor: 6.937

5.  Using the reactome database.

Authors:  Robin Haw; Lincoln Stein
Journal:  Curr Protoc Bioinformatics       Date:  2012-06

6.  Ontologies in quantitative biology: a basis for comparison, integration, and discovery.

Authors:  Lars J Jensen; Peer Bork
Journal:  PLoS Biol       Date:  2010-05-25       Impact factor: 8.029

7.  Characterization of breast cancer interstitial fluids by TmT labeling, LTQ-Orbitrap Velos mass spectrometry, and pathway analysis.

Authors:  Cinzia Raso; Carlo Cosentino; Marco Gaspari; Natalia Malara; Xuemei Han; Daniel McClatchy; Sung Kyu Park; Maria Renne; Nuria Vadalà; Ubaldo Prati; Giovanni Cuda; Vincenzo Mollace; Francesco Amato; John R Yates
Journal:  J Proteome Res       Date:  2012-05-16       Impact factor: 4.466

8.  PATHLOGIC-S: a scalable Boolean framework for modelling cellular signalling.

Authors:  Liam G Fearnley; Lars K Nielsen
Journal:  PLoS One       Date:  2012-08-07       Impact factor: 3.240

9.  The morningside initiative: collaborative development of a knowledge repository to accelerate adoption of clinical decision support.

Authors:  Robert Greenes; Meryl Bloomrosen; Nancy E Brown-Connolly; Clayton Curtis; Don E Detmer; Robert Enberg; Douglas Fridsma; Emory Fry; Mary K Goldstein; Peter Haug; Nathan Hulse; Tonya Hongsermeier; Saverio Maviglia; Craig W Robbins; Hemant Shah
Journal:  Open Med Inform J       Date:  2010-12-14

10.  NAViGaTing the micronome--using multiple microRNA prediction databases to identify signalling pathway-associated microRNAs.

Authors:  Elize A Shirdel; Wing Xie; Tak W Mak; Igor Jurisica
Journal:  PLoS One       Date:  2011-02-25       Impact factor: 3.240
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