Literature DB >> 15336533

A genome-wide and nonredundant mouse transcription factor database.

Mutsumi Kanamori1, Hideaki Konno, Naoki Osato, Jun Kawai, Yoshihide Hayashizaki, Harukazu Suzuki.   

Abstract

Here we describe the development of a genome-wide and nonredundant mouse transcription factor database and its viewer (http://genome.gsc.riken.gp/TFdb/). We systematically selected transcription factors with DNA-binding properties and their regulators on the basis of their LocusLink and Gene Ontology annotations. We also incorporated into our database information regarding the corresponding available cDNA clones and their structural properties. Because of these features, our database is unique and may provide useful information for systematic genome-wide studies of transcriptional regulation.

Entities:  

Mesh：

Substances：

Year:  2004        PMID： 15336533     DOI： 10.1016/j.bbrc.2004.07.179

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN： 0006-291X            Impact factor:   3.575


  68 in total

1.  Transcription factors expressed in olfactory bulb local progenitor cells revealed by genome-wide transcriptome profiling.

Authors:  Gordon R O Campbell; Ariane Baudhuin; Karen Vranizan; John Ngai
Journal:  Mol Cell Neurosci       Date:  2010-12-29       Impact factor: 4.314

2.  Prediction of active nodes in the transcriptional network of neural tube patterning.

Authors:  Chrissa Kioussi; Hung-Ping Shih; John Loflin; Michael K Gross
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-28       Impact factor: 11.205

3.  Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

Authors:  Eivind Valen; Giovanni Pascarella; Alistair Chalk; Norihiro Maeda; Miki Kojima; Chika Kawazu; Mitsuyoshi Murata; Hiromi Nishiyori; Dejan Lazarevic; Dario Motti; Troels Torben Marstrand; Man-Hung Eric Tang; Xiaobei Zhao; Anders Krogh; Ole Winther; Takahiro Arakawa; Jun Kawai; Christine Wells; Carsten Daub; Matthias Harbers; Yoshihide Hayashizaki; Stefano Gustincich; Albin Sandelin; Piero Carninci
Journal:  Genome Res       Date:  2008-12-11       Impact factor: 9.043

4.  Max is a repressor of germ cell-related gene expression in mouse embryonic stem cells.

Authors:  Ikuma Maeda; Daiji Okamura; Yuko Tokitake; Makiko Ikeda; Hiroko Kawaguchi; Nathan Mise; Kuniya Abe; Toshiaki Noce; Akihiko Okuda; Yasuhisa Matsui
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

5.  Bone marrow adipogenic lineage precursors promote osteoclastogenesis in bone remodeling and pathologic bone loss.

Authors:  Wei Yu; Leilei Zhong; Lutian Yao; Yulong Wei; Tao Gui; Ziqing Li; Hyunsoo Kim; Nicholas Holdreith; Xi Jiang; Wei Tong; Nathaniel Dyment; X Sherry Liu; Shuying Yang; Yongwon Choi; Jaimo Ahn; Ling Qin
Journal:  J Clin Invest       Date:  2021-01-19       Impact factor: 14.808

6.  A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58.

Authors:  Shigetoshi Yokoyama; Yoshiaki Ito; Hiroe Ueno-Kudoh; Hirohito Shimizu; Kenta Uchibe; Sonia Albini; Kazuhiko Mitsuoka; Shigeru Miyaki; Minako Kiso; Akane Nagai; Tomohiro Hikata; Tadahiro Osada; Noritsugu Fukuda; Satoshi Yamashita; Daisuke Harada; Valeria Mezzano; Masataka Kasai; Pier Lorenzo Puri; Yoshihide Hayashizaki; Haruo Okado; Megumi Hashimoto; Hiroshi Asahara
Journal:  Dev Cell       Date:  2009-12       Impact factor: 12.270

Review 7.  Genomic repertoires of DNA-binding transcription factors across the tree of life.

Authors:  Varodom Charoensawan; Derek Wilson; Sarah A Teichmann
Journal:  Nucleic Acids Res       Date:  2010-07-30       Impact factor: 16.971

8.  Transcriptional profiling reveals gland-specific differential expression in the three major salivary glands of the adult mouse.

Authors:  Xin Gao; Maria S Oei; Catherine E Ovitt; Murat Sincan; James E Melvin
Journal:  Physiol Genomics       Date:  2018-01-26       Impact factor: 3.107

9.  Predicting and validating the pathway of Wnt3a-driven suppression of osteoclastogenesis.

Authors:  Kazunori Hamamura; Andy Chen; Akinobu Nishimura; Nancy Tanjung; Akihiro Sudo; Hiroki Yokota
Journal:  Cell Signal       Date:  2014-07-16       Impact factor: 4.315

10.  Genome-wide coactivation analysis of PGC-1alpha identifies BAF60a as a regulator of hepatic lipid metabolism.

Authors:  Siming Li; Chang Liu; Na Li; Tong Hao; Ting Han; David E Hill; Marc Vidal; Jiandie D Lin
Journal:  Cell Metab       Date:  2008-08       Impact factor: 27.287
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.