Literature DB >> 15331225

Picking a winner: new mechanistic insights into the design of effective siRNAs.

Delquin Gong1, James E Ferrell.   

Abstract

Recent work has shown that the efficacy of a small interfering RNA (siRNA) for silencing gene expression is a function of how easy it is to unwind the siRNA from the 5'-antisense end. Based on these insights, one group has designed an algorithm that substantially improves the odds of picking an effective siRNA, and two groups have shown that 'forked' or 'frayed' siRNAs, which should be easier to unwind from the 5'-antisense end, are more effective than conventional siRNAs. These strategies represent important steps towards the rational design of effective siRNAs.

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Year:  2004        PMID: 15331225     DOI: 10.1016/j.tibtech.2004.07.008

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  16 in total

1.  Sequence characteristics of functional siRNAs.

Authors:  Bernd Jagla; Nathalie Aulner; Peter D Kelly; Da Song; Allen Volchuk; Andrzej Zatorski; David Shum; Thomas Mayer; Dino A De Angelis; Ouathek Ouerfelli; Urs Rutishauser; James E Rothman
Journal:  RNA       Date:  2005-06       Impact factor: 4.942

Review 2.  Silence of the transcripts: RNA interference in medicine.

Authors:  Sailen Barik
Journal:  J Mol Med (Berl)       Date:  2005-07-19       Impact factor: 4.599

3.  Sequence homology required by human immunodeficiency virus type 1 to escape from short interfering RNAs.

Authors:  Rosario Sabariegos; Mireia Giménez-Barcons; Natalia Tàpia; Bonaventura Clotet; Miguel Angel Martínez
Journal:  J Virol       Date:  2006-01       Impact factor: 5.103

4.  Suppression of the Sendai virus M protein through a novel short interfering RNA approach inhibits viral particle production but does not affect viral RNA synthesis.

Authors:  Geneviève Mottet-Osman; Frédéric Iseni; Thierry Pelet; Maciej Wiznerowicz; Dominique Garcin; Laurent Roux
Journal:  J Virol       Date:  2006-12-27       Impact factor: 5.103

Review 5.  Therapeutic gene silencing in neurological disorders, using interfering RNA.

Authors:  G Scott Ralph; Nicholas D Mazarakis; Mimoun Azzouz
Journal:  J Mol Med (Berl)       Date:  2005-03-10       Impact factor: 4.599

6.  BAG3, a host cochaperone, facilitates varicella-zoster virus replication.

Authors:  Christos A Kyratsous; Saul J Silverstein
Journal:  J Virol       Date:  2007-05-02       Impact factor: 5.103

7.  OCRL1 function in renal epithelial membrane traffic.

Authors:  Shanshan Cui; Christopher J Guerriero; Christina M Szalinski; Carol L Kinlough; Rebecca P Hughey; Ora A Weisz
Journal:  Am J Physiol Renal Physiol       Date:  2009-11-25

8.  96 shRNAs designed for maximal coverage of HIV-1 variants.

Authors:  Glen John McIntyre; Jennifer Lynne Groneman; Yi-Hsin Yu; Angel Jaramillo; Sylvie Shen; Tanya Lynn Applegate
Journal:  Retrovirology       Date:  2009-06-04       Impact factor: 4.602

9.  Designer siRNAs to overcome the challenges from the RNAi pathway.

Authors:  Sumedha D Jayasena
Journal:  J RNAi Gene Silencing       Date:  2005-11-30

10.  Prediction of guide strand of microRNAs from its sequence and secondary structure.

Authors:  Firoz Ahmed; Hifzur Rahman Ansari; Gajendra P S Raghava
Journal:  BMC Bioinformatics       Date:  2009-04-09       Impact factor: 3.169

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