Literature DB >> 15330638

Solvent effects and mechanism for a nucleophilic aromatic substitution from QM/MM simulations.

Orlando Acevedo1, William L Jorgensen.   

Abstract

The nucleophilic aromatic substitution (SNAr) reaction between azide ion and 4-fluoronitrobenzene has been investigated using QM/MM and DFT/PCM calculations in protic and dipolar aprotic solvents. The effects of solvation on the transition structures, the intermediate Meisenheimer complex, and the rate of reaction are elucidated. The large rate increases in proceeding from protic to dipolar aprotic solvents are only reproduced by the QM/MM methodology. Copyright 2004 American Chemical Society

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15330638     DOI: 10.1021/ol049121k

Source DB:  PubMed          Journal:  Org Lett        ISSN: 1523-7052            Impact factor:   6.005


  15 in total

1.  Why urea eliminates ammonia rather than hydrolyzes in aqueous solution.

Authors:  Anastassia N Alexandrova; William L Jorgensen
Journal:  J Phys Chem B       Date:  2007-02-01       Impact factor: 2.991

2.  Quantum and Molecular Mechanical (QM/MM) Monte Carlo Techniques for Modeling Condensed-Phase Reactions.

Authors:  Orlando Acevedo; Wiliiam L Jorgensen
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2014-09

3.  Hybrid dynamics simulation engine for metalloproteins.

Authors:  Manuel Sparta; David Shirvanyants; Feng Ding; Nikolay V Dokholyan; Anastassia N Alexandrova
Journal:  Biophys J       Date:  2012-08-22       Impact factor: 4.033

4.  Thorpe-Ingold acceleration of oxirane formation is mostly a solvent effect.

Authors:  Jakub Kostal; William L Jorgensen
Journal:  J Am Chem Soc       Date:  2010-06-30       Impact factor: 15.419

5.  Challenges and advances in validating enzyme design proposals: the case of kemp eliminase catalysis.

Authors:  Maria P Frushicheva; Jie Cao; Arieh Warshel
Journal:  Biochemistry       Date:  2011-04-15       Impact factor: 3.162

6.  On the mechanism and rate of spontaneous decomposition of amino acids.

Authors:  Anastassia N Alexandrova; William L Jorgensen
Journal:  J Phys Chem B       Date:  2011-10-31       Impact factor: 2.991

7.  Origin of the activity drop with the E50D variant of catalytic antibody 34E4 for Kemp elimination.

Authors:  Anastassia N Alexandrova; William L Jorgensen
Journal:  J Phys Chem B       Date:  2009-01-15       Impact factor: 2.991

8.  Catalytic mechanism and performance of computationally designed enzymes for Kemp elimination.

Authors:  Anastassia N Alexandrova; Daniela Röthlisberger; David Baker; William L Jorgensen
Journal:  J Am Chem Soc       Date:  2008-11-26       Impact factor: 15.419

9.  Extension of the PDDG/PM3 Semiempirical Molecular Orbital Method to Sulfur, Silicon, and Phosphorus.

Authors:  Ivan Tubert-Brohman; Cristiano Ruch Werneck Guimarães; William L Jorgensen
Journal:  J Chem Theory Comput       Date:  2005       Impact factor: 6.006

10.  The origins of femtomolar protein-ligand binding: hydrogen-bond cooperativity and desolvation energetics in the biotin-(strept)avidin binding site.

Authors:  Jason DeChancie; K N Houk
Journal:  J Am Chem Soc       Date:  2007-04-07       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.