Literature DB >> 15329310

Optimizing RNA extraction yield from whole blood for microarray gene expression analysis.

Jian Wang1, John F Robinson, Hafiz M R Khan, David E Carter, James McKinney, Brooke A Miskie, Robert A Hegele.   

Abstract

OBJECTIVES: Microarray analysis of gene expression profiles of blood leukocytes has many potential clinical and research applications. DESIGN AND METHODS: We used the PAXgene Blood RNA System to prepare RNA from the whole blood of normal volunteers using two incubation times followed by gene expression profiling using the Affymetrix HU133A GeneChip.
CONCLUSIONS: Longer incubation gave a significantly higher RNA yield and samples that were satisfactory for microarray analysis, with excellent pairwise correlations between replicates.

Mesh:

Substances:

Year:  2004        PMID: 15329310     DOI: 10.1016/j.clinbiochem.2004.03.013

Source DB:  PubMed          Journal:  Clin Biochem        ISSN: 0009-9120            Impact factor:   3.281


  11 in total

1.  Isolation of microarray-grade total RNA, microRNA, and DNA from a single PAXgene blood RNA tube.

Authors:  Mogens Kruhøffer; Lars Dyrskjøt; Thorsten Voss; Raija L P Lindberg; Ralf Wyrich; Thomas Thykjaer; Torben F Orntoft
Journal:  J Mol Diagn       Date:  2007-08-09       Impact factor: 5.568

2.  Age and gender related differences in human parotid gland gene expression.

Authors:  Alaka Srivastava; Jianghua Wang; Hui Zhou; James E Melvin; David T Wong
Journal:  Arch Oral Biol       Date:  2008-06-20       Impact factor: 2.633

Review 3.  Cellular defense system gene expression profiling of human whole blood: opportunities to predict health benefits in response to diet.

Authors:  Janice E Drew
Journal:  Adv Nutr       Date:  2012-07-01       Impact factor: 8.701

4.  Interlaboratory performance of a microarray-based gene expression test to determine tissue of origin in poorly differentiated and undifferentiated cancers.

Authors:  Catherine I Dumur; Maureen Lyons-Weiler; Christin Sciulli; Carleton T Garrett; Iris Schrijver; Tara K Holley; Juan Rodriguez-Paris; Jonathan R Pollack; James L Zehnder; Melissa Price; Jill M Hagenkord; C Ted Rigl; Ljubomir J Buturovic; Glenda G Anderson; Federico A Monzon
Journal:  J Mol Diagn       Date:  2007-12-13       Impact factor: 5.568

5.  Investigation of variation in gene expression profiling of human blood by extended principle component analysis.

Authors:  Qinghua Xu; Shujuan Ni; Fei Wu; Fang Liu; Xun Ye; Bruno Mougin; Xia Meng; Xiang Du
Journal:  PLoS One       Date:  2011-10-27       Impact factor: 3.240

6.  Using a microfluidic device for 1 microl DNA microarray hybridization in 500 s.

Authors:  Cheng-Wey Wei; Ji-Yen Cheng; Chih-Ting Huang; Meng-Hua Yen; Tai-Horng Young
Journal:  Nucleic Acids Res       Date:  2005-05-12       Impact factor: 16.971

7.  Investigation of fasciculation and elongation protein ζ-1 (FEZ1) in peripheral blood reveals differences in gene expression in patients with schizophrenia.

Authors:  T I Vachev; V K Stoyanova; H Y Ivanov; I N Minkov; N T Popov
Journal:  Balkan J Med Genet       Date:  2015-12-30       Impact factor: 0.519

8.  Gene expression patterns in peripheral blood correlate with the extent of coronary artery disease.

Authors:  Peter R Sinnaeve; Mark P Donahue; Peter Grass; David Seo; Jacky Vonderscher; Salah-Dine Chibout; William E Kraus; Michael Sketch; Charlotte Nelson; Geoffrey S Ginsburg; Pascal J Goldschmidt-Clermont; Christopher B Granger
Journal:  PLoS One       Date:  2009-09-14       Impact factor: 3.240

9.  Hematopoietic Lineage Transcriptome Stability and Representation in PAXgene Collected Peripheral Blood Utilising SPIA Single-Stranded cDNA Probes for Microarray.

Authors:  Laura Kennedy; J Keith Vass; D Ross Haggart; Steve Moore; Michael E Burczynski; Dan Crowther; Gino Miele
Journal:  Biomark Insights       Date:  2008-08-25

10.  Successful downstream application of the Paxgene Blood RNA system from small blood samples in paediatric patients for quantitative PCR analysis.

Authors:  Enitan D Carrol; Fiona Salway; Stuart D Pepper; Emma Saunders; Limangeni A Mankhambo; William E Ollier; C Anthony Hart; Phillip Day
Journal:  BMC Immunol       Date:  2007-09-12       Impact factor: 3.615

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