Literature DB >> 15327979

Role of amino-acid residue 95 in substrate specificity of phosphagen kinases.

Kumiko Tanaka1, Tomohiko Suzuki.   

Abstract

The purpose of this study is to elucidate the mechanisms of guanidine substrate specificity in phosphagen kinases, including creatine kinase (CK), glycocyamine kinase (GK), lombricine kinase (LK), taurocyamine kinase (TK) and arginine kinase (AK). Among these enzymes, LK is unique in that it shows considerable enzyme activity for taurocyamine in addition to its original target substrate, lombricine. We earlier proposed several candidate amino acids associated with guanidine substrate recognition. Here, we focus on amino-acid residue 95, which is strictly conserved in phosphagen kinases: Arg in CK, Ile in GK, Lys in LK and Tyr in AK. This residue is not directly associated with substrate binding in CK and AK crystal structures, but it is located close to the binding site of the guanidine substrate. We replaced amino acid 95 Lys in LK isolated from earthworm Eisenia foetida with two amino acids, Arg or Tyr, expressed the modified enzymes in Escherichia coli as a fusion protein with maltose-binding protein, and determined the kinetic parameters. The K95R mutant enzyme showed a stronger affinity for both lombricine (Km=0.74 mM and kcat/Km=19.34 s(-1) mM(-1)) and taurocyamine (Km=2.67 and kcat/Km=2.81), compared with those of the wild-type enzyme (Km=5.33 and kcat/Km=3.37 for lombricine, and Km=15.31 and kcat/ Km=0.48for taurocyamine). Enzyme activity of the other mutant, K95Y, was dramatically altered. The affinity for taurocyamine (Km=1.93 and kcat/Km=6.41) was enhanced remarkably and that for lombricine (Km=14.2 and kcat/Km=0.72) was largely decreased, indicating that this mutant functions as a taurocyamine kinase. This mutant also had a lower but significant enzyme activity for the substrate arginine (Km=33.28 and kcat/Km=0.01). These results suggest that Eisenia LK is an inherently flexible enzyme and that substrate specificity is strongly controlled by the amino-acid residue at position 95.

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Year:  2004        PMID: 15327979     DOI: 10.1016/j.febslet.2004.07.061

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  6 in total

1.  The structure of lombricine kinase: implications for phosphagen kinase conformational changes.

Authors:  D Jeffrey Bush; Olga Kirillova; Shawn A Clark; Omar Davulcu; Felcy Fabiola; Qing Xie; Thayumanasamy Somasundaram; W Ross Ellington; Michael S Chapman
Journal:  J Biol Chem       Date:  2011-01-06       Impact factor: 5.157

2.  Cold-adapted features of arginine kinase from the deep-sea clam Calyptogena kaikoi.

Authors:  Tomohiko Suzuki; Kentaro Yamamoto; Hiroshi Tada; Kouji Uda
Journal:  Mar Biotechnol (NY)       Date:  2011-10-21       Impact factor: 3.619

3.  A novel arginine kinase with substrate specificity towards D-arginine.

Authors:  Kouji Uda; Tomohiko Suzuki
Journal:  Protein J       Date:  2007-08       Impact factor: 2.371

4.  Arginine Kinases from the Precious Corals Corallium rubrum and Paracorallium japonicum: Presence of Two Distinct Arginine Kinase Gene Lineages in Cnidarians.

Authors:  Tomoka Matsuo; Daichi Yano; Kouji Uda; Nozomu Iwasaki; Tomohiko Suzuki
Journal:  Protein J       Date:  2017-12       Impact factor: 2.371

5.  Biochemical and structural characterization of a novel arginine kinase from the spider Polybetes pythagoricus.

Authors:  Aldana Laino; Alonso A Lopez-Zavala; Karina D Garcia-Orozco; Jesus S Carrasco-Miranda; Marianela Santana; Vivian Stojanoff; Rogerio R Sotelo-Mundo; Carlos Fernando Garcia
Journal:  PeerJ       Date:  2017-09-11       Impact factor: 2.984

6.  Molecular cloning and characterization of taurocyamine kinase from Clonorchis sinensis: a candidate chemotherapeutic target.

Authors:  Jing-Ying Xiao; Ji-Yun Lee; Shinji Tokuhiro; Mitsuru Nagataki; Blanca R Jarilla; Haruka Nomura; Tae Im Kim; Sung-Jong Hong; Takeshi Agatsuma
Journal:  PLoS Negl Trop Dis       Date:  2013-11-21
  6 in total

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