Literature DB >> 15327954

Covalent reaction intermediate revealed in crystal structure of the Geobacillus stearothermophilus carboxylesterase Est30.

Ping Liu1, Yuan-Fang Wang, Hosam E Ewis, Ahmed T Abdelal, Chung-Dar Lu, Robert W Harrison, Irene T Weber.   

Abstract

Est30 is a thermophilic carboxylesterase cloned from Geobacillus stearothermophilus that showed optimal hydrolysis of esters with short acyl chains at 70 degrees C. Est30 is a member of a new family of carboxylesterases with representatives in other Gram-positive bacteria. The crystal structure has been determined at 1.63A resolution using multiple anomalous dispersion data. The two-domain crystal structure showed a large domain with a modified alpha/beta hydrolase core including a seven, rather than an eight-stranded beta sheet, and a smaller cap domain comprising three alpha helices. The catalytic triad consists of residues Ser94, Asp193, and His223. A 100Da tetrahedral ligand was observed to be covalently bound to the side-chain of Ser94. The propyl acetate ligand represents the first tetrahedral intermediate in the reaction mechanism. Therefore, this Est30 crystal structure will help understand the mode of action of all enzymes in the serine hydrolase superfamily.

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Year:  2004        PMID: 15327954     DOI: 10.1016/j.jmb.2004.06.069

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  22 in total

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Authors:  Mats Linder; Adam Johannes Johansson; Tjelvar S G Olsson; John Liebeschuetz; Tore Brinck
Journal:  J Comput Aided Mol Des       Date:  2012-09-16       Impact factor: 3.686

2.  Cloning, expression, purification and preliminary X-ray analysis of a putative metagenome-derived lipase.

Authors:  Francesco Fersini; Yuliya Dall'Antonia; Jennifer Chow; Wolfgang R Streit; Jochen Mueller-Dieckmann
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-07-31

3.  Overexpression, purification, and biochemical characterization of the esterase Est0796 from Lactobacillus plantarum WCFS1.

Authors:  Inmaculada Navarro-González; Navarro-González Inmaculada; Sánchez-Ferrer Alvaro; García-Carmona Francisco
Journal:  Mol Biotechnol       Date:  2013-06       Impact factor: 2.695

4.  A cold-adapted esterase of a novel marine isolate, Pseudoalteromonas arctica: gene cloning, enzyme purification and characterization.

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Journal:  Extremophiles       Date:  2010-03-09       Impact factor: 2.395

5.  Structural insights into the low pH adaptation of a unique carboxylesterase from Ferroplasma: altering the pH optima of two carboxylesterases.

Authors:  Kazuhiro Ohara; Hideaki Unno; Yasuhiro Oshima; Miho Hosoya; Naoto Fujino; Kazutake Hirooka; Seiji Takahashi; Satoshi Yamashita; Masami Kusunoki; Toru Nakayama
Journal:  J Biol Chem       Date:  2014-07-20       Impact factor: 5.157

6.  Construction of a novel lipolytic fusion biocatalyst GDEst-lip for industrial application.

Authors:  Renata Gudiukaite; Mikas Sadauskas; Audrius Gegeckas; Vilius Malunavicius; Donaldas Citavicius
Journal:  J Ind Microbiol Biotechnol       Date:  2017-01-19       Impact factor: 3.346

7.  How the Same Core Catalytic Machinery Catalyzes 17 Different Reactions: the Serine-Histidine-Aspartate Catalytic Triad of α/β-Hydrolase Fold Enzymes.

Authors:  Alissa Rauwerdink; Romas J Kazlauskas
Journal:  ACS Catal       Date:  2015-09-09       Impact factor: 13.084

8.  Structure and activity of the cold-active and anion-activated carboxyl esterase OLEI01171 from the oil-degrading marine bacterium Oleispira antarctica.

Authors:  Sofia Lemak; Anatoli Tchigvintsev; Pierre Petit; Robert Flick; Alexander U Singer; Greg Brown; Elena Evdokimova; Olga Egorova; Claudio F Gonzalez; Tatyana N Chernikova; Michail M Yakimov; Michael Kube; Richard Reinhardt; Peter N Golyshin; Alexei Savchenko; Alexander F Yakunin
Journal:  Biochem J       Date:  2012-07-15       Impact factor: 3.857

9.  The cold-active Lip1 lipase from the Antarctic bacterium Pseudoalteromonas haloplanktis TAC125 is a member of a new bacterial lipolytic enzyme family.

Authors:  Donatella de Pascale; Angela M Cusano; Flavia Autore; Ermenegilda Parrilli; Guido di Prisco; Gennaro Marino; M Luisa Tutino
Journal:  Extremophiles       Date:  2008-04-24       Impact factor: 2.395

10.  Crystallization and preliminary X-ray analysis of a novel type of lipolytic hydrolase from Bacillus licheniformis.

Authors:  Hansol Ju; Ramesh Pandian; Kyungmin Kim; Kyeong Kyu Kim; T Doohun Kim
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-03-25       Impact factor: 1.056

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