Literature DB >> 15324279

Measurement of the phase diagram of DNA unzipping in the temperature-force plane.

C Danilowicz1, Y Kafri, R S Conroy, V W Coljee, J Weeks, M Prentiss.   

Abstract

We separate double stranded lambda phage DNA by applying a fixed force at a constant temperature ranging from 15 to 50 degrees C, and measure the minimum force required to separate the two strands. The measurements also offer information on the free energy of double stranded DNA (dsDNA) at temperatures where dsDNA does not thermally denature in the absence of force. While parts of the phase diagram can be explained using existing models and free energy parameters, others deviate significantly. Possible reasons for the deviations between theory and experiment are considered.

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Year:  2004        PMID: 15324279     DOI: 10.1103/PhysRevLett.93.078101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  10 in total

1.  Pause point spectra in DNA constant-force unzipping.

Authors:  J D Weeks; J B Lucks; Y Kafri; C Danilowicz; D R Nelson; M Prentiss
Journal:  Biophys J       Date:  2005-02-04       Impact factor: 4.033

2.  Lambda exonuclease digestion of CGG trinucleotide repeats.

Authors:  R S Conroy; A P Koretsky; J Moreland
Journal:  Eur Biophys J       Date:  2009-06-27       Impact factor: 1.733

3.  The structure of DNA overstretched from the 5'5' ends differs from the structure of DNA overstretched from the 3'3' ends.

Authors:  Claudia Danilowicz; Charles Limouse; Kristi Hatch; Alyson Conover; Vincent W Coljee; Nancy Kleckner; Mara Prentiss
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-28       Impact factor: 11.205

4.  Nonlinearity in DNA and its relation to specific functions.

Authors:  Boian Alexandrov; Kim Ø Rasmussen; Alan R Bishop
Journal:  J Biol Phys       Date:  2009-02-25       Impact factor: 1.365

5.  Free-energy landscape and characteristic forces for the initiation of DNA unzipping.

Authors:  Ahmet Mentes; Ana Maria Florescu; Elizabeth Brunk; Jeff Wereszczynski; Marc Joyeux; Ioan Andricioaei
Journal:  Biophys J       Date:  2015-04-07       Impact factor: 4.033

6.  Ionic effects on the temperature-force phase diagram of DNA.

Authors:  Sitichoke Amnuanpol
Journal:  J Biol Phys       Date:  2017-09-14       Impact factor: 1.365

7.  Comparison of the measured phase diagrams in the force-temperature plane for the unzipping of two different natural DNA sequences.

Authors:  C H Lee; C Danilowicz; V W Coljee; M Prentiss
Journal:  Eur Phys J E Soft Matter       Date:  2006-03-16       Impact factor: 1.890

8.  Multiplexed single-molecule force spectroscopy using a centrifuge.

Authors:  Darren Yang; Andrew Ward; Ken Halvorsen; Wesley P Wong
Journal:  Nat Commun       Date:  2016-03-17       Impact factor: 14.919

9.  Determination of the Thermodynamic Parameters of DNA Double Helix Unwinding with the Help of Mechanical Methods.

Authors:  Nina N Kurus; Fedor N Dultsev
Journal:  ACS Omega       Date:  2018-03-08

10.  Inverse Temperature Dependence of Nuclear Quantum Effects in DNA Base Pairs.

Authors:  Wei Fang; Ji Chen; Mariana Rossi; Yexin Feng; Xin-Zheng Li; Angelos Michaelides
Journal:  J Phys Chem Lett       Date:  2016-05-24       Impact factor: 6.475

  10 in total

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