Literature DB >> 15319258

Simulating genetic networks made easy: network construction with simple building blocks.

Steven Vercruysse1, Martin Kuiper.   

Abstract

UNLABELLED: We present SIM-plex, a genetic network simulator with a very intuitive interface in which a user can easily specify interactions as simple 'if-then' statements. The simulator is based on the mathematical model of Piecewise Linear Differential Equations (PLDEs). With PLDEs, genetic interactions are approximated as acting in a switch-like manner. AVAILABILITY: The Java program, examples and a tutorial are available at http://www.psb.ugent.be/cbd/ CONTACT: {stcru,makui}@psb.ugent.be

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Year:  2004        PMID： 15319258     DOI： 10.1093/bioinformatics/bth478

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  3 in total

1.  The Arabidopsis leaf as a model system for investigating the role of cell cycle regulation in organ growth.

Authors:  Gerrit T S Beemster; Steven Vercruysse; Lieven De Veylder; Martin Kuiper; Dirk Inzé
Journal:  J Plant Res       Date:  2005-11-15       Impact factor: 2.629

2.  Genetics, cell cycle and cell expansion in organogenesis in plants.

Authors:  Hirokazu Tsukaya; Gerrit T S Beemster
Journal:  J Plant Res       Date:  2006-01       Impact factor: 2.629

3.  The cyclin-dependent kinase inhibitor KRP2 controls the onset of the endoreduplication cycle during Arabidopsis leaf development through inhibition of mitotic CDKA;1 kinase complexes.

Authors:  Aurine Verkest; Carmem-Lara de O Manes; Steven Vercruysse; Sara Maes; Els Van Der Schueren; Tom Beeckman; Pascal Genschik; Martin Kuiper; Dirk Inzé; Lieven De Veylder
Journal:  Plant Cell       Date:  2005-04-29       Impact factor: 11.277
  3 in total

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