Literature DB >> 1531271

An in vitro system for the editing of ATP synthase subunit 9 mRNA using wheat mitochondrial extracts.

A Araya1, C Domec, D Begu, S Litvak.   

Abstract

A posttranscriptional modification (C-to-U) at specific positions of plant mitochondrial mRNA leads to changes in the amino acid sequence as well as to the emergence of novel initiation or termination sites. This phenomenon, named RNA editing, has been described for several mitochondrial genes from different plant sources. We have found recently that RNA editing of the ATP synthase subunit 9 (atp9) mRNA involves eight changes including the creation of a new stop codon. In this article, we describe an in vitro system devised to follow the editing of wheat mitochondrial atp9 mRNA. Nonedited mRNA was obtained to serve as substrate for this reaction by in vitro transcription of the corresponding gene with T7 RNA polymerase. The source of conversion factor(s) was a soluble fraction obtained from purified wheat mitochondria lysed with salt and detergent. Edited RNA molecules were detected by hybridization with an end-labeled synthetic oligodeoxynucleotide probe complementary to a short region containing four editing events. Optimal conditions for the in vitro RNA editing reaction were determined. The reaction is sensitive to high temperature and protease digestion. Pretreatment with micrococcal nuclease decreased RNA editing activity in the mitochondrial extract, suggesting that a nucleic acid is necessary for the enzymatic reactions. Analysis of the edited mRNA showed that the in vitro reaction led to the same products as those observed in vivo.

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Year:  1992        PMID: 1531271      PMCID: PMC48381          DOI: 10.1073/pnas.89.3.1040

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  Substrate masking: binding of RNA by EGTA-inactivated micrococcal nuclease results in artifactual inhibition of RNA processing reactions.

Authors:  M J Wang; P Gegenheimer
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

2.  Wheat mitochondrial DNA: organization and sequences of the atpA and atp9 genes.

Authors:  E Schulte; S Staubach; B Laser; U Kück
Journal:  Nucleic Acids Res       Date:  1989-09-25       Impact factor: 16.971

3.  A model for RNA editing in kinetoplastid mitochondria: "guide" RNA molecules transcribed from maxicircle DNA provide the edited information.

Authors:  B Blum; N Bakalara; L Simpson
Journal:  Cell       Date:  1990-01-26       Impact factor: 41.582

4.  RNA sequence and the nature of the CuA-binding site in cytochrome c oxidase.

Authors:  P S Covello; M W Gray
Journal:  FEBS Lett       Date:  1990-07-30       Impact factor: 4.124

5.  RNA editing in plant mitochondria.

Authors:  P S Covello; M W Gray
Journal:  Nature       Date:  1989-10-19       Impact factor: 49.962

6.  Nucleotide sequence of the F1-ATPase subunit alpha genes from two lines of wheat.

Authors:  D Bégu; P V Graves; S Litvak; A Araya
Journal:  Nucleic Acids Res       Date:  1989-11-25       Impact factor: 16.971

7.  A 40 kilodalton rat liver nuclear protein binds specifically to apolipoprotein B mRNA around the RNA editing site.

Authors:  P P Lau; S H Chen; J C Wang; L Chan
Journal:  Nucleic Acids Res       Date:  1990-10-11       Impact factor: 16.971

8.  A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine.

Authors:  L M Powell; S C Wallis; R J Pease; Y H Edwards; T J Knott; J Scott
Journal:  Cell       Date:  1987-09-11       Impact factor: 41.582

9.  Apolipoprotein B-48 is the product of a messenger RNA with an organ-specific in-frame stop codon.

Authors:  S H Chen; G Habib; C Y Yang; Z W Gu; B R Lee; S A Weng; S R Silberman; S J Cai; J P Deslypere; M Rosseneu
Journal:  Science       Date:  1987-10-16       Impact factor: 47.728

10.  Studies on transformation of Escherichia coli with plasmids.

Authors:  D Hanahan
Journal:  J Mol Biol       Date:  1983-06-05       Impact factor: 5.469

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  18 in total

1.  Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: development of a chloroplast in vitro RNA editing system.

Authors:  T Hirose; M Sugiura
Journal:  EMBO J       Date:  2001-03-01       Impact factor: 11.598

2.  Gene expression in isolated plant mitochondria: high fidelity of transcription, splicing and editing of a transgene product in electroporated organelles.

Authors:  J C Farré; A Araya
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

3.  Transfer of plastid RNA-editing activity to novel sites suggests a critical role for spacing in editing-site recognition.

Authors:  M Hermann; R Bock
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-27       Impact factor: 11.205

4.  Complex cis-elements determine an RNA editing site in pea mitochondria.

Authors:  Mizuki Takenaka; Julia Neuwirt; Axel Brennicke
Journal:  Nucleic Acids Res       Date:  2004-08-04       Impact factor: 16.971

5.  RNA editing events in mitochondrial genes by ultra-deep sequencing methods: a comparison of cytoplasmic male sterile, fertile and restored genotypes in cotton.

Authors:  Hideaki Suzuki; Jiwen Yu; Scott A Ness; Mary A O'Connell; Jinfa Zhang
Journal:  Mol Genet Genomics       Date:  2013-06-29       Impact factor: 3.291

6.  Sequences directing C to U editing of the plastid psbL mRNA are located within a 22 nucleotide segment spanning the editing site.

Authors:  S Chaudhuri; P Maliga
Journal:  EMBO J       Date:  1996-11-01       Impact factor: 11.598

Review 7.  RNA editing in plant organelles: a fertile field.

Authors:  M W Gray
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-06       Impact factor: 11.205

8.  Extraplastidic site-specific factors mediate RNA editing in chloroplasts.

Authors:  R Bock; H U Koop
Journal:  EMBO J       Date:  1997-06-02       Impact factor: 11.598

Review 9.  RNA editing in plant mitochondria and chloroplasts.

Authors:  R M Maier; P Zeltz; H Kössel; G Bonnard; J M Gualberto; J M Grienenberger
Journal:  Plant Mol Biol       Date:  1996-10       Impact factor: 4.076

10.  Mitochondrial electroporation and in organello RNA editing of chimeric atp6 transcripts.

Authors:  Matthias Staudinger; Nina Bolle; Frank Kempken
Journal:  Mol Genet Genomics       Date:  2005-02-24       Impact factor: 3.291

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