Literature DB >> 15310560

DisProt: a database of protein disorder.

Slobodan Vucetic1, Zoran Obradovic, Vladimir Vacic, Predrag Radivojac, Kang Peng, Lilia M Iakoucheva, Marc S Cortese, J David Lawson, Celeste J Brown, Jason G Sikes, Crystal D Newton, A Keith Dunker.   

Abstract

UNLABELLED: The Database of Protein Disorder (DisProt) is a curated database that provides structure and function information about proteins that lack a fixed three-dimensional (3D) structure under putatively native conditions, either in their entirety or in part. Starting from the central premise that intrinsic disorder is an important structural class of protein and in order to meet the increasing interest thereof, DisProt is aimed at becoming a central repository of disorder-related information. For each disordered protein, the database includes the name of the protein, various aliases, accession codes, amino acid sequence, location of the disordered region(s), and methods used for structural (disorder) characterization. If applicable, most entries also list the biological function(s) of each disordered region, how each region of disorder is used for function, as well as provide links to PubMed abstracts and major protein databases. AVAILABILITY: www.disprot.org

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Year:  2004        PMID: 15310560     DOI: 10.1093/bioinformatics/bth476

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  81 in total

Review 1.  Modeling loop entropy.

Authors:  Gregory S Chirikjian
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

2.  Tertiary structural rearrangements upon oxidation of Methionine145 in calmodulin promotes targeted proteasomal degradation.

Authors:  Colette A Sacksteder; Jennifer E Whittier; Yijia Xiong; Jinhui Li; Nadezhda A Galeva; Michael E Jacoby; Samuel O Purvine; Todd D Williams; Martin C Rechsteiner; Diana J Bigelow; Thomas C Squier
Journal:  Biophys J       Date:  2006-06-02       Impact factor: 4.033

3.  Rational design of p53, an intrinsically unstructured protein, for the fabrication of novel molecular sensors.

Authors:  Melissa L Geddie; Taryn L O'Loughlin; Kristen K Woods; Ichiro Matsumura
Journal:  J Biol Chem       Date:  2005-08-23       Impact factor: 5.157

4.  Specific interactions by the N-terminal arm inhibit self-association of the AraC dimerization domain.

Authors:  John E Weldon; Robert F Schleif
Journal:  Protein Sci       Date:  2006-12       Impact factor: 6.725

5.  Multiple U2AF65 binding sites within SF3b155: thermodynamic and spectroscopic characterization of protein-protein interactions among pre-mRNA splicing factors.

Authors:  Karen R Thickman; Matthew C Swenson; Joseph M Kabogo; Zygmunt Gryczynski; Clara L Kielkopf
Journal:  J Mol Biol       Date:  2005-12-07       Impact factor: 5.469

6.  Interactions between the lipoprotein PilP and the secretin PilQ in Neisseria meningitidis.

Authors:  Seetha V Balasingham; Richard F Collins; Reza Assalkhou; Håvard Homberset; Stephan A Frye; Jeremy P Derrick; Tone Tønjum
Journal:  J Bacteriol       Date:  2007-05-25       Impact factor: 3.490

Review 7.  Protein aggregation processes: In search of the mechanism.

Authors:  Carl Frieden
Journal:  Protein Sci       Date:  2007-11       Impact factor: 6.725

8.  Mass spectrometry analysis of HIV-1 Vif reveals an increase in ordered structure upon oligomerization in regions necessary for viral infectivity.

Authors:  Jared R Auclair; Karin M Green; Shivender Shandilya; James E Evans; Mohan Somasundaran; Celia A Schiffer
Journal:  Proteins       Date:  2007-11-01

9.  Expression, purification, and characterization of a structurally disordered and functional C-terminal autoinhibitory domain (AID) of the 70 kDa 40S ribosomal protein S6 kinase-1 (S6K1).

Authors:  Timothy J Ragan; Duncan B Ross; Malik M Keshwani; Thomas K Harris
Journal:  Protein Expr Purif       Date:  2007-10-01       Impact factor: 1.650

Review 10.  The importance of being flexible: the case of basic region leucine zipper transcriptional regulators.

Authors:  Maria Miller
Journal:  Curr Protein Pept Sci       Date:  2009-06       Impact factor: 3.272

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