Literature DB >> 15302219

Subfunctionalization: How often does it occur? How long does it take?

Rachel Ward1, Richard Durrett.   

Abstract

The mechanisms responsible for the preservation of duplicate genes have been debated for more than 70 years. Recently, Lynch and Force have proposed a new explanation: subfunctionalization--after duplication the two gene copies specialize to perform complementary functions. We investigate the probability that subfunctionalization occurs, the amount of time after duplication that it takes for the outcome to be resolved, and the relationship of these quantities to the population size and mutation rates.

Mesh：

Year:  2004        PMID： 15302219     DOI： 10.1016/j.tpb.2004.03.004

Source DB:  PubMed          Journal:  Theor Popul Biol        ISSN： 0040-5809            Impact factor:   1.570


  10 in total

1.  A diffusion approach to approximating preservation probabilities for gene duplicates.

Authors:  Martin O'Hely
Journal:  J Math Biol       Date:  2006-05-06       Impact factor: 2.259

2.  On the genealogy of a duplicated microsatellite.

Authors:  Kangyu Zhang; Noah A Rosenberg
Journal:  Genetics       Date:  2007-10-18       Impact factor: 4.562

Review 3.  Archaeology of eukaryotic DNA replication.

Authors:  Kira S Makarova; Eugene V Koonin
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-11-01       Impact factor: 10.005

4.  Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant.

Authors:  Ran Hovav; Joshua A Udall; Bhupendra Chaudhary; Ryan Rapp; Lex Flagel; Jonathan F Wendel
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-17       Impact factor: 11.205

5.  Functional Diversity of Haloacid Dehalogenase Superfamily Phosphatases from Saccharomyces cerevisiae: BIOCHEMICAL, STRUCTURAL, AND EVOLUTIONARY INSIGHTS.

Authors:  Ekaterina Kuznetsova; Boguslaw Nocek; Greg Brown; Kira S Makarova; Robert Flick; Yuri I Wolf; Anna Khusnutdinova; Elena Evdokimova; Ke Jin; Kemin Tan; Andrew D Hanson; Ghulam Hasnain; Rémi Zallot; Valérie de Crécy-Lagard; Mohan Babu; Alexei Savchenko; Andrzej Joachimiak; Aled M Edwards; Eugene V Koonin; Alexander F Yakunin
Journal:  J Biol Chem       Date:  2015-06-12       Impact factor: 5.157

6.  Tissue-specific expression patterns of Arabidopsis NF-Y transcription factors suggest potential for extensive combinatorial complexity.

Authors:  Nicholas Siefers; Kristen K Dang; Roderick W Kumimoto; William Edwards Bynum; Gregory Tayrose; Ben F Holt
Journal:  Plant Physiol       Date:  2008-11-19       Impact factor: 8.340

Review 7.  Kalirin and Trio: RhoGEFs in Synaptic Transmission, Plasticity, and Complex Brain Disorders.

Authors:  Jeremiah D Paskus; Bruce E Herring; Katherine W Roche
Journal:  Trends Neurosci       Date:  2020-05-11       Impact factor: 13.837

8.  Tomato gamma-glutamylhydrolases: expression, characterization, and evidence for heterodimer formation.

Authors:  Tariq A Akhtar; Ryan P McQuinn; Valeria Naponelli; Jesse F Gregory; James J Giovannoni; Andrew D Hanson
Journal:  Plant Physiol       Date:  2008-08-29       Impact factor: 8.340

9.  Positive and strongly relaxed purifying selection drive the evolution of repeats in proteins.

Authors:  Erez Persi; Yuri I Wolf; Eugene V Koonin
Journal:  Nat Commun       Date:  2016-11-18       Impact factor: 14.919

10.  The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization.

Authors:  Kang Du; Matthias Stöck; Susanne Kneitz; Christophe Klopp; Joost M Woltering; Mateus Contar Adolfi; Romain Feron; Dmitry Prokopov; Alexey Makunin; Ilya Kichigin; Cornelia Schmidt; Petra Fischer; Heiner Kuhl; Sven Wuertz; Jörn Gessner; Werner Kloas; Cédric Cabau; Carole Iampietro; Hugues Parrinello; Chad Tomlinson; Laurent Journot; John H Postlethwait; Ingo Braasch; Vladimir Trifonov; Wesley C Warren; Axel Meyer; Yann Guiguen; Manfred Schartl
Journal:  Nat Ecol Evol       Date:  2020-03-30       Impact factor: 15.460
  10 in total

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