Literature DB >> 15299935

C-H...O hydrogen bonds in beta-sheets.

G F Fabiola1, S Krishnaswamy, V Nagarajan, V Pattabhi.   

Abstract

A detailed analysis of the occurrence of the C-H...O hydrogen bonds in sheet regions of proteins has been presented. 11 unique protein structures with resolution 1.3 A containing beta-sheets show a widespread presence of C-H...O hydrogen bonds. These have average C(alpha).O, CH...O distances and a C(alpha)-H...O angle of 3.29, 2.38 A and 143 degrees, respectively. As in the case of N-H...O hydrogen bonds, parallel and antiparallel beta-sheet regions show the same hydrogen-bond geometry. An inverse correlation is observed between the hydrogen-bond geometries involving the C(alpha)(i)-H...O=C and the N(i+1)-H...O=C suggesting that C-H...O hydrogen bonds may act as an additional stabilizing factor. The propensity of different amino-acid residues to form such hydrogen bonds varies and shows a clear preference for valine and threonine. C-H...O hydrogen bonds involving side chains also occur extensively in beta-sheet regions.

Entities:  

Year:  1997        PMID: 15299935     DOI: 10.1107/S0907444997000383

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  17 in total

1.  The Calpha ---H...O hydrogen bond: a determinant of stability and specificity in transmembrane helix interactions.

Authors:  A Senes; I Ubarretxena-Belandia; D M Engelman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

2.  NCI: A server to identify non-canonical interactions in protein structures.

Authors:  M Madan Babu
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  Analysis of side-chain rotamers in transmembrane proteins.

Authors:  Aaron K Chamberlain; James U Bowie
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

4.  Contribution of active site glutamine to rate enhancement in ubiquitin C-terminal hydrolases.

Authors:  David A Boudreaux; Joseph Chaney; Tushar K Maiti; Chittaranjan Das
Journal:  FEBS J       Date:  2012-02-27       Impact factor: 5.542

5.  A novel computational and structural analysis of nsSNPs in CFTR gene.

Authors:  C George Priya Doss; R Rajasekaran; C Sudandiradoss; K Ramanathan; R Purohit; R Sethumadhavan
Journal:  Genomic Med       Date:  2008-05-14

6.  Influence of C-H...O interactions on the structural stability of β-lactamases.

Authors:  P Lavanya; Sudha Ramaiah; Anand Anbarasu
Journal:  J Biol Phys       Date:  2013-06-25       Impact factor: 1.365

7.  The environment of amide groups in protein-ligand complexes: H-bonds and beyond.

Authors:  Simona Cotesta; Martin Stahl
Journal:  J Mol Model       Date:  2005-12-13       Impact factor: 1.810

8.  The reconstruction of atomic co-ordinates from a protein stereo ribbon diagram when additional information for sufficient sidechain positions is available.

Authors:  P S de Oliveira; R C Garratt
Journal:  J Comput Aided Mol Des       Date:  1998-11       Impact factor: 3.686

9.  Scientific benchmarks for guiding macromolecular energy function improvement.

Authors:  Andrew Leaver-Fay; Matthew J O'Meara; Mike Tyka; Ron Jacak; Yifan Song; Elizabeth H Kellogg; James Thompson; Ian W Davis; Roland A Pache; Sergey Lyskov; Jeffrey J Gray; Tanja Kortemme; Jane S Richardson; James J Havranek; Jack Snoeyink; David Baker; Brian Kuhlman
Journal:  Methods Enzymol       Date:  2013       Impact factor: 1.600

10.  Investigation on the role of nsSNPs in HNPCC genes--a bioinformatics approach.

Authors:  C George Priya Doss; Rao Sethumadhavan
Journal:  J Biomed Sci       Date:  2009-04-24       Impact factor: 8.410

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