Literature DB >> 15299768

1.6 A structure of semisynthetic ribonuclease crystallized from aqueous ethanol. Comparison with crystals from salt solutions and with ribonuclease A from aqueous alcohol solutions.

S J de Mel1, M S Doscher, P D Martin, F Rodier, B F Edwards.   

Abstract

The non-covalent combination of residues 1-118 of RNase A with a synthetic 14-residue peptide containing residues 111-124 of the molecule forms a highly active semisynthetic enzyme, RNase 1-118:111-124. With this enzyme, the roles played by the six C-terminal residues in generating the catalytic efficiency and substrate specificity of RNase can be studied using chemically synthesized analogs. The structure of RNase 1-118:111-124 from 43% aqueous ethanol has been determined using molecular-replacement methods and refined to a crystallographic R-factor of 0.166 for all observed reflections in the range 7.0-1.6 A (Protein Data Bank file ISSC). The structure is compared with the 2.0 A structure of RNase A from 43% aqueous 2-methyl-2-propanol and with the 1.8 A structure of the semisynthetic enzyme obtained from crystals grown in concentrated salt solution. The structure of RNase 1-118:111-124 from aqueous ethanol is virtually identical to that of RNase A from aqueous 2-methyl-2-propanol. Half of the crystallographically bound water molecules are not coincident, however. The structure is somewhat less similar to that of RNase 1-118:111-124 from salt solutions, with a major difference being the positioning of active-site residue His119.

Entities:  

Year:  1995        PMID: 15299768     DOI: 10.1107/S0907444995004574

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  2 in total

1.  Harnessing protein folding neural networks for peptide-protein docking.

Authors:  Tomer Tsaban; Julia K Varga; Orly Avraham; Ziv Ben-Aharon; Alisa Khramushin; Ora Schueler-Furman
Journal:  Nat Commun       Date:  2022-01-10       Impact factor: 14.919

2.  Molecular evolution of B6 enzymes: binding of pyridoxal-5'-phosphate and Lys41Arg substitution turn ribonuclease A into a model B6 protoenzyme.

Authors:  Rosa A Vacca; Sergio Giannattasio; Guido Capitani; Ersilia Marra; Philipp Christen
Journal:  BMC Biochem       Date:  2008-06-19       Impact factor: 4.059

  2 in total

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