Literature DB >> 15299648

Efficient rebuilding of protein structures.

G J Kleywegt1, T A Jones.   

Abstract

A computer program, called OOPS, is described which facilitates and speeds up the process of rebuilding a protein structure inside its electron density and reduces the chances of local errors persevering throughout the crystallographic protein structure determination process. The program uses a set of criteria to judge how reasonable each protein residue is and it generates macros for the macromolecular crystallographic model-building program O [Jones, Zou, Cowan & Kjeldgaard (1991). Acta Cryst. A47, 110-119] which, when executed, will take the crystallographer on a journey along all suspect residues.

Year:  1996        PMID: 15299648     DOI: 10.1107/S0907444996001783

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  50 in total

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Authors:  H Jing; Y Xu; M Carson; D Moore; K J Macon; J E Volanakis; S V Narayana
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2.  Joint refinement as a tool for thorough comparison between NMR and X-ray data and structures of HU protein.

Authors:  M L Raves; J F Doreleijer; H Vis; C E Vorgias; K S Wilson; R Kaptei
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3.  Structural basis for basal activity and autoactivation of abscisic acid (ABA) signaling SnRK2 kinases.

Authors:  Ley-Moy Ng; Fen-Fen Soon; X Edward Zhou; Graham M West; Amanda Kovach; Kelly M Suino-Powell; Michael J Chalmers; Jun Li; Eu-Leong Yong; Jian-Kang Zhu; Patrick R Griffin; Karsten Melcher; H Eric Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

4.  The crystal structure of xanthine oxidoreductase during catalysis: implications for reaction mechanism and enzyme inhibition.

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5.  Atomic resolution structures of resting-state, substrate- and product-complexed Cu-nitrite reductase provide insight into catalytic mechanism.

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6.  Structural basis for the histone chaperone activity of Asf1.

Authors:  Christine M English; Melissa W Adkins; Joshua J Carson; Mair E A Churchill; Jessica K Tyler
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7.  Structure of a peptide:N-glycanase-Rad23 complex: insight into the deglycosylation for denatured glycoproteins.

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8.  Crystal structure of the human GINS complex.

Authors:  Jung Min Choi; Hye Seong Lim; Jeong Joo Kim; Ok-Kyu Song; Yunje Cho
Journal:  Genes Dev       Date:  2007-06-01       Impact factor: 11.361

9.  The structure of the Met144Leu mutant of copper nitrite reductase from Alcaligenes xylosoxidans provides the first glimpse of a protein-protein complex with azurin II.

Authors:  Konstantinos Paraskevopoulos; Michael A Hough; R Gary Sawers; Robert R Eady; S Samar Hasnain
Journal:  J Biol Inorg Chem       Date:  2007-05-15       Impact factor: 3.358

10.  A Ras-induced conformational switch in the Ras activator Son of sevenless.

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-30       Impact factor: 11.205

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