Literature DB >> 15299312

Coordinate-based cluster analysis.

R Diamond1.   

Abstract

A new approach to cluster analysis of structures based on collective superpositions rather than pairwise superpositions is presented. The method is fast and rigorous and is illustrated by application to 21 structures derived from NMR experiments. Source code, suitable for most laboratory machines, is available from the author, and a CCP4 version is in preparation.

Entities:  

Year:  1995        PMID： 15299312     DOI： 10.1107/S0907444994010723

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN： 0907-4449


  17 in total

1.  Refinement of the structure of protein-RNA complexes by residual dipolar coupling analysis.

Authors:  P Bayer; L Varani; G Varani
Journal:  J Biomol NMR       Date:  1999-06       Impact factor: 2.835

2.  HMG-D complexed to a bulge DNA: an NMR model.

Authors:  R Cerdan; D Payet; J C Yang; A A Travers; D Neuhaus
Journal:  Protein Sci       Date:  2001-03       Impact factor: 6.725

3.  Treatment of NOE constraints involving equivalent or nonstereoassigned protons in calculations of biomacromolecular structures.

Authors:  C M Fletcher; D N Jones; R Diamond; D Neuhaus
Journal:  J Biomol NMR       Date:  1996-10       Impact factor: 2.835

4.  Structural basis for recognition of the RNA major groove in the tau exon 10 splicing regulatory element by aminoglycoside antibiotics.

Authors:  L Varani; M G Spillantini; M Goedert; G Varani
Journal:  Nucleic Acids Res       Date:  2000-02-01       Impact factor: 16.971

5.  Grabbing the message: structural basis of mRNA 3'UTR recognition by Hrp1.

Authors:  José Manuel Pérez-Cañadillas
Journal:  EMBO J       Date:  2006-06-22       Impact factor: 11.598

6.  A robust method for quantitative identification of ordered cores in an ensemble of biomolecular structures by non-linear multi-dimensional scaling using inter-atomic distance variance matrix.

Authors:  Naohiro Kobayashi
Journal:  J Biomol NMR       Date:  2014-01-03       Impact factor: 2.835

7.  Determination of the NMR structure of the complex between U1A protein and its RNA polyadenylation inhibition element.

Authors:  P W Howe; F H Allain; G Varani; D Neuhaus
Journal:  J Biomol NMR       Date:  1998-01       Impact factor: 2.835

8.  Structure of the acceptor stem of Escherichia coli tRNA Ala: role of the G3.U70 base pair in synthetase recognition.

Authors:  A Ramos; G Varani
Journal:  Nucleic Acids Res       Date:  1997-06-01       Impact factor: 16.971

9.  Combinatorial readout of histone H3 modifications specifies localization of ATRX to heterochromatin.

Authors:  Sebastian Eustermann; Ji-Chun Yang; Martin J Law; Rachel Amos; Lynda M Chapman; Clare Jelinska; David Garrick; David Clynes; Richard J Gibbons; Daniela Rhodes; Douglas R Higgs; David Neuhaus
Journal:  Nat Struct Mol Biol       Date:  2011-06-12       Impact factor: 15.369

10.  Structure of the N-terminal Mlp1-binding domain of the Saccharomyces cerevisiae mRNA-binding protein, Nab2.

Authors:  Richard P Grant; Neil J Marshall; Ji-Chun Yang; Milo B Fasken; Seth M Kelly; Michelle T Harreman; David Neuhaus; Anita H Corbett; Murray Stewart
Journal:  J Mol Biol       Date:  2007-12-04       Impact factor: 5.469
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