Literature DB >> 15298891

Hill coefficient for estimating the magnitude of cooperativity in gating transitions of voltage-dependent ion channels.

Ofer Yifrach1.   

Abstract

A frequently used measure for the extent of cooperativity in ligand binding by an allosteric protein is the Hill coefficient, obtained by fitting data of initial reaction velocity (or fractional binding saturation) as a function of substrate concentration to the Hill equation. Here, it is demonstrated that the simple two-state Boltzmann equation that is widely used to fit voltage-activation data of voltage-dependent ion channels is analogous to the Hill equation. A general empiric definition for a Hill coefficient (n(H)) for channel gating transitions that is analogous to the logarithmic potential sensitivity function of Almers is derived. This definition provides a novel framework for interpreting the meaning of the Hill coefficient. In considering three particular and simple gating schemes for a voltage-activated cation channel, the relation of the Hill coefficient to the magnitude and nature of cooperative interactions along the reaction coordinate of channel gating is demonstrated. A possible functional explanation for the low value of the Hill coefficient for gating transitions of the Shaker voltage-activated K(+) channel is suggested. The analogy between the Hill coefficients for ligand binding and for channel gating transitions further points to a unified conceptual framework in analyzing enzymes and channels behavior.

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Year:  2004        PMID: 15298891      PMCID: PMC1304492          DOI: 10.1529/biophysj.104.040410

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

Review 1.  The voltage sensor in voltage-dependent ion channels.

Authors:  F Bezanilla
Journal:  Physiol Rev       Date:  2000-04       Impact factor: 37.312

2.  Energetics of pore opening in a voltage-gated K(+) channel.

Authors:  Ofer Yifrach; Roderick MacKinnon
Journal:  Cell       Date:  2002-10-18       Impact factor: 41.582

3.  Evidence for cooperative interactions in potassium channel gating.

Authors:  J Tytgat; P Hess
Journal:  Nature       Date:  1992-10-01       Impact factor: 49.962

4.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

5.  A role for hydrophobic residues in the voltage-dependent gating of Shaker K+ channels.

Authors:  K McCormack; M A Tanouye; L E Iverson; J W Lin; M Ramaswami; T McCormack; J T Campanelli; M K Mathew; B Rudy
Journal:  Proc Natl Acad Sci U S A       Date:  1991-04-01       Impact factor: 11.205

6.  The size of gating charge in wild-type and mutant Shaker potassium channels.

Authors:  N E Schoppa; K McCormack; M A Tanouye; F J Sigworth
Journal:  Science       Date:  1992-03-27       Impact factor: 47.728

Review 7.  Voltage gating of ion channels.

Authors:  F J Sigworth
Journal:  Q Rev Biophys       Date:  1994-02       Impact factor: 5.318

8.  Voltage sensitivity and gating charge in Shaker and Shab family potassium channels.

Authors:  L D Islas; F J Sigworth
Journal:  J Gen Physiol       Date:  1999-11       Impact factor: 4.086

9.  Transfer of twelve charges is needed to open skeletal muscle Na+ channels.

Authors:  B Hirschberg; A Rovner; M Lieberman; J Patlak
Journal:  J Gen Physiol       Date:  1995-12       Impact factor: 4.086

10.  Shaker potassium channel gating. III: Evaluation of kinetic models for activation.

Authors:  W N Zagotta; T Hoshi; R W Aldrich
Journal:  J Gen Physiol       Date:  1994-02       Impact factor: 4.086

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  28 in total

1.  Hill coefficients of a polymodal Monod-Wyman-Changeux model for ion channel gating.

Authors:  Feng Qin
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

2.  Principles underlying energetic coupling along an allosteric communication trajectory of a voltage-activated K+ channel.

Authors:  Evgeniya Sadovsky; Ofer Yifrach
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-05       Impact factor: 11.205

3.  Coupling of S4 helix translocation and S6 gating analyzed by molecular-dynamics simulations of mutated Kv channels.

Authors:  Manami Nishizawa; Kazuhisa Nishizawa
Journal:  Biophys J       Date:  2009-07-08       Impact factor: 4.033

4.  Dynamic change of electrostatic field in TMEM16F permeation pathway shifts its ion selectivity.

Authors:  Wenlei Ye; Tina W Han; Mu He; Yuh Nung Jan; Lily Yeh Jan
Journal:  Elife       Date:  2019-07-18       Impact factor: 8.140

Review 5.  Cooperativity Principles in Self-Assembled Nanomedicine.

Authors:  Yang Li; Yiguang Wang; Gang Huang; Jinming Gao
Journal:  Chem Rev       Date:  2018-04-25       Impact factor: 60.622

Review 6.  High-Dimensional Mutant and Modular Thermodynamic Cycles, Molecular Switching, and Free Energy Transduction.

Authors:  Charles W Carter
Journal:  Annu Rev Biophys       Date:  2017-03-24       Impact factor: 12.981

7.  Activation of the archaeal ion channel MthK is exquisitely regulated by temperature.

Authors:  Yihao Jiang; Vinay Idikuda; Sandipan Chowdhury; Baron Chanda
Journal:  Elife       Date:  2020-12-04       Impact factor: 8.140

8.  A linkage analysis toolkit for studying allosteric networks in ion channels.

Authors:  Daniel Sigg
Journal:  J Gen Physiol       Date:  2012-12-17       Impact factor: 4.086

9.  Proton inhibition of unitary currents of vanilloid receptors.

Authors:  Beiying Liu; Jing Yao; Yingwei Wang; Hui Li; Feng Qin
Journal:  J Gen Physiol       Date:  2009-09       Impact factor: 4.086

10.  Uncooperative voltage sensors.

Authors:  Richard Horn
Journal:  J Gen Physiol       Date:  2009-05       Impact factor: 4.086

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