Literature DB >> 15298394

Pseudorotation of natural and chemically modified biological phosphoranes: implications for RNA catalysis.

Carlos Silva López1, Olalla Nieto Faza, Brent A Gregersen, Xabier Lopez, Angel R de Lera, Darrin M York.   

Abstract

Entities:  

Mesh：

Substances：

Year:  2004        PMID： 15298394     DOI： 10.1002/cphc.200400091

Source DB:  PubMed          Journal:  Chemphyschem        ISSN： 1439-4235            Impact factor:   3.102


× No keyword cloud information.
  8 in total

Review 1.  RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.

Authors:  Jiří Šponer; Giovanni Bussi; Miroslav Krepl; Pavel Banáš; Sandro Bottaro; Richard A Cunha; Alejandro Gil-Ley; Giovanni Pinamonti; Simón Poblete; Petr Jurečka; Nils G Walter; Michal Otyepka
Journal:  Chem Rev       Date:  2018-01-03       Impact factor: 60.622

2.  CHARMM force field parameters for simulation of reactive intermediates in native and thio-substituted ribozymes.

Authors:  Evelyn Mayaan; Adam Moser; Alexander D MacKerell; Darrin M York
Journal:  J Comput Chem       Date:  2007-01-30       Impact factor: 3.376

3.  Accurate proton affinity and gas-phase basicity values for molecules important in biocatalysis.

Authors:  Adam Moser; Kevin Range; Darrin M York
Journal:  J Phys Chem B       Date:  2010-11-04       Impact factor: 2.991

4.  Kinetic isotope effects for RNA cleavage by 2'-O- transphosphorylation: nucleophilic activation by specific base.

Authors:  Michael E Harris; Qing Dai; Hong Gu; Daniel L Kellerman; Joseph A Piccirilli; Vernon E Anderson
Journal:  J Am Chem Soc       Date:  2010-08-25       Impact factor: 15.419

5.  Does water relay play an important role in phosphoryl transfer reactions? Insights from theoretical study of a model reaction in water and tert-butanol.

Authors:  Yang Yang; Qiang Cui
Journal:  J Phys Chem B       Date:  2009-04-09       Impact factor: 2.991

6.  Linear free energy relationships in RNA transesterification: theoretical models to aid experimental interpretations.

Authors:  Ming Huang; Darrin M York
Journal:  Phys Chem Chem Phys       Date:  2014-08-14       Impact factor: 3.676

7.  Description of phosphate hydrolysis reactions with the Self-Consistent-Charge Density-Functional-Tight-Binding (SCC-DFTB) theory. 1. Parameterization.

Authors:  Yang Yang; Haibo Yu; Darrin York; Marcus Elstner; Qiang Cui
Journal:  J Chem Theory Comput       Date:  2008       Impact factor: 6.006

Review 8.  Phosphodiester models for cleavage of nucleic acids.

Authors:  Satu Mikkola; Tuomas Lönnberg; Harri Lönnberg
Journal:  Beilstein J Org Chem       Date:  2018-04-10       Impact factor: 2.883
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.