Literature DB >> 15297540

Real-time TaqMan PCR for quantifying oral bacteria during biofilm formation.

Nao Suzuki1, Yoshio Nakano, Akihiro Yoshida, Yoshihisa Yamashita, Yusuke Kiyoura.   

Abstract

A TaqMan PCR was developed for quantifying early colonizer microorganisms in dental biofilms. To design species-specific primers and TaqMan probes, genomic subtractive hybridization was used. This quantitative assay in combination with subtractive hybridization may be of value in the study of microbial ecosystems consisting of related species that are involved in the formation and etiology of biofilms.

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Year:  2004        PMID： 15297540      PMCID： PMC497611          DOI： 10.1128/JCM.42.8.3827-3830.2004

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  13 in total

1.  Development of a 5' nuclease-based real-time PCR assay for quantitative detection of cariogenic dental pathogens Streptococcus mutans and Streptococcus sobrinus.

Authors:  Akihiro Yoshida; Nao Suzuki; Yoshio Nakano; Miki Kawada; Takahiko Oho; Toshihiko Koga
Journal:  J Clin Microbiol       Date:  2003-09       Impact factor: 5.948

2.  Microbiology of the early colonization of human enamel and root surfaces in vivo.

Authors:  B Nyvad; M Kilian
Journal:  Scand J Dent Res       Date:  1987-10

3.  Identification of regions of the chromosome of Neisseria meningitidis and Neisseria gonorrhoeae which are specific to the pathogenic Neisseria species.

Authors:  A Perrin; X Nassif; C Tinsley
Journal:  Infect Immun       Date:  1999-11       Impact factor: 3.441

4.  Cloning the differences between two complex genomes.

Authors:  N Lisitsyn; N Lisitsyn; M Wigler
Journal:  Science       Date:  1993-02-12       Impact factor: 47.728

5.  Quantitative microbiological study of human carious dentine by culture and real-time PCR: association of anaerobes with histopathological changes in chronic pulpitis.

Authors:  F Elizabeth Martin; Mangala A Nadkarni; Nicholas A Jacques; Neil Hunter
Journal:  J Clin Microbiol       Date:  2002-05       Impact factor: 5.948

6.  Complete genome sequence of an M1 strain of Streptococcus pyogenes.

Authors:  J J Ferretti; W M McShan; D Ajdic; D J Savic; G Savic; K Lyon; C Primeaux; S Sezate; A N Suvorov; S Kenton; H S Lai; S P Lin; Y Qian; H G Jia; F Z Najar; Q Ren; H Zhu; L Song; J White; X Yuan; S W Clifton; B A Roe; R McLaughlin
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-10       Impact factor: 11.205

7.  Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti.

Authors:  T Kaneko; Y Nakamura; S Sato; E Asamizu; T Kato; S Sasamoto; A Watanabe; K Idesawa; A Ishikawa; K Kawashima; T Kimura; Y Kishida; C Kiyokawa; M Kohara; M Matsumoto; A Matsuno; Y Mochizuki; S Nakayama; N Nakazaki; S Shimpo; M Sugimoto; C Takeuchi; M Yamada; S Tabata
Journal:  DNA Res       Date:  2000-12-31       Impact factor: 4.458

8.  Comparison of the initial streptococcal microflora on dental enamel in caries-active and in caries-inactive individuals.

Authors:  B Nyvad; M Kilian
Journal:  Caries Res       Date:  1990       Impact factor: 4.056

9.  The genome sequence and structure of rice chromosome 1.

Authors:  Takuji Sasaki; Takashi Matsumoto; Kimiko Yamamoto; Katsumi Sakata; Tomoya Baba; Yuichi Katayose; Jianzhong Wu; Yoshihito Niimura; Zhukuan Cheng; Yoshiaki Nagamura; Baltazar A Antonio; Hiroyuki Kanamori; Satomi Hosokawa; Masatoshi Masukawa; Koji Arikawa; Yoshino Chiden; Mika Hayashi; Masako Okamoto; Tsuyu Ando; Hiroyoshi Aoki; Kohei Arita; Masao Hamada; Chizuko Harada; Saori Hijishita; Mikiko Honda; Yoko Ichikawa; Atsuko Idonuma; Masumi Iijima; Michiko Ikeda; Maiko Ikeno; Sachie Ito; Tomoko Ito; Yuichi Ito; Yukiyo Ito; Aki Iwabuchi; Kozue Kamiya; Wataru Karasawa; Satoshi Katagiri; Ari Kikuta; Noriko Kobayashi; Izumi Kono; Kayo Machita; Tomoko Maehara; Hiroshi Mizuno; Tatsumi Mizubayashi; Yoshiyuki Mukai; Hideki Nagasaki; Marina Nakashima; Yuko Nakama; Yumi Nakamichi; Mari Nakamura; Nobukazu Namiki; Manami Negishi; Isamu Ohta; Nozomi Ono; Shoko Saji; Kumiko Sakai; Michie Shibata; Takanori Shimokawa; Ayahiko Shomura; Jianyu Song; Yuka Takazaki; Kimihiro Terasawa; Kumiko Tsuji; Kazunori Waki; Harumi Yamagata; Hiroko Yamane; Shoji Yoshiki; Rie Yoshihara; Kazuko Yukawa; Huisun Zhong; Hisakazu Iwama; Toshinori Endo; Hidetaka Ito; Jang Ho Hahn; Ho-Il Kim; Moo-Young Eun; Masahiro Yano; Jiming Jiang; Takashi Gojobori
Journal:  Nature       Date:  2002-11-21       Impact factor: 49.962

10.  PCR-based subtractive hybridization and differences in gene content among strains of Helicobacter pylori.

Authors:  N S Akopyants; A Fradkov; L Diatchenko; J E Hill; P D Siebert; S A Lukyanov; E D Sverdlov; D E Berg
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-27       Impact factor: 11.205
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  14 in total

1.  Development of a real-time TaqMan assay to detect mendocina sublineage Pseudomonas species in contaminated metalworking fluids.

Authors:  Ratul Saha; Robert S Donofrio; Susan T Bagley
Journal:  J Ind Microbiol Biotechnol       Date:  2010-05-11       Impact factor: 3.346

2.  High-throughput screening of multispecies biofilm formation and quantitative PCR-based assessment of individual species proportions, useful for exploring interspecific bacterial interactions.

Authors:  Dawei Ren; Jonas Stenløkke Madsen; Claudia I de la Cruz-Perera; Lasse Bergmark; Søren J Sørensen; Mette Burmølle
Journal:  Microb Ecol       Date:  2013-12-12       Impact factor: 4.552

3.  Novel dental composite with capability to suppress cariogenic species and promote non-cariogenic species in oral biofilms.

Authors:  Haohao Wang; Suping Wang; Lei Cheng; Yaling Jiang; Mary Anne S Melo; Michael D Weir; Thomas W Oates; Xuedong Zhou; Hockin H K Xu
Journal:  Mater Sci Eng C Mater Biol Appl       Date:  2018-10-02       Impact factor: 7.328

4.  Discrimination of Streptococcus pneumoniae from viridans group streptococci by genomic subtractive hybridization.

Authors:  Nao Suzuki; Mitsuko Seki; Yoshio Nakano; Yusuke Kiyoura; Masao Maeno; Yoshihisa Yamashita
Journal:  J Clin Microbiol       Date:  2005-09       Impact factor: 5.948

5.  Use of the genomic subtractive hybridization technique to develop a real-time PCR assay for quantitative detection of Prevotella spp. in oral biofilm samples.

Authors:  Shiori Nagashima; Akihiro Yoshida; Nao Suzuki; Toshihiro Ansai; Tadamichi Takehara
Journal:  J Clin Microbiol       Date:  2005-06       Impact factor: 5.948

6.  No evidence for the growth-stimulating effect of monomers on cariogenic Streptococci.

Authors:  Ivana Nedeljkovic; Kumiko Yoshihara; Jan De Munck; Wim Teughels; Bart Van Meerbeek; Kirsten L Van Landuyt
Journal:  Clin Oral Investig       Date:  2016-10-20       Impact factor: 3.573

Review 7.  Quantitative analysis of multi-species oral biofilms by TaqMan Real-Time PCR.

Authors:  Nao Suzuki; Akihiro Yoshida; Yoshio Nakano
Journal:  Clin Med Res       Date:  2005-08

8.  Effects of Antimicrobial Peptide GH12 on the Cariogenic Properties and Composition of a Cariogenic Multispecies Biofilm.

Authors:  Wentao Jiang; Yufei Wang; Junyuan Luo; Xinwei Li; Xuedong Zhou; Wei Li; Linglin Zhang
Journal:  Appl Environ Microbiol       Date:  2018-11-30       Impact factor: 4.792

9.  Quantitative molecular detection of putative periodontal pathogens in clinically healthy and periodontally diseased subjects.

Authors:  André Göhler; Adrian Hetzer; Birte Holtfreter; Marie Henrike Geisel; Carsten Oliver Schmidt; Ivo Steinmetz; Thomas Kocher
Journal:  PLoS One       Date:  2014-07-16       Impact factor: 3.240

10.  Viable Compositional Analysis of an Eleven Species Oral Polymicrobial Biofilm.

Authors:  Leighann Sherry; Gillian Lappin; Lindsay E O'Donnell; Emma Millhouse; Owain R Millington; David J Bradshaw; Alyson S Axe; Craig Williams; Christopher J Nile; Gordon Ramage
Journal:  Front Microbiol       Date:  2016-06-10       Impact factor: 5.640
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