Literature DB >> 15293546

Highly compact 2D graphical representation of DNA sequences.

M Randić1, J Zupan.   

Abstract

Most 2D graphical representations of primary DNA sequences, while offering visual geometrical patterns for depicting sequences, do require considerable space if enough details of such representations are to be visible. In this contribution, we consider a highly compact graphical representation of DNA, which allows visual inspection and numerical characterization of DNA sequences having a large number of nucleic acid bases. The approach is illustrated on the DNA sequences of the first exon of human beta-globin. The same graphical approach not only allows one to depict differences in composition within a single DNA, but makes possible graphical representation of protein sequences, which have hitherto evaded similar 2D visual representations.

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Year:  2004        PMID: 15293546     DOI: 10.1080/10629360410001697753

Source DB:  PubMed          Journal:  SAR QSAR Environ Res        ISSN: 1026-776X            Impact factor:   3.000


  4 in total

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Journal:  Protein J       Date:  2011-03       Impact factor: 2.371

2.  Exploring the adenylation domain repertoire of nonribosomal peptide synthetases using an ensemble of sequence-search methods.

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Journal:  PLoS One       Date:  2013-07-16       Impact factor: 3.240

3.  Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices.

Authors:  Alcides Perez-Bello; Cristian Robert Munteanu; Florencio M Ubeira; Alexandre Lopes De Magalhães; Eugenio Uriarte; Humberto González-Díaz
Journal:  J Theor Biol       Date:  2008-10-17       Impact factor: 2.691

4.  Measuring Similarity among Protein Sequences Using a New Descriptor.

Authors:  Mervat M Abo-Elkhier; Marwa A Abd Elwahaab; Moheb I Abo El Maaty
Journal:  Biomed Res Int       Date:  2019-11-22       Impact factor: 3.411

  4 in total

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