Literature DB >> 15290760

Development of image processing program for yeast cell morphology.

Miwaka Ohtani1, Ayaka Saka, Fumi Sano, Yoshikazu Ohya, Shinichi Morishita.   

Abstract

Every living organism has its own species-specific morphology. Despite the relatively simple ellipsoidal shape of budding yeast cells, the global regulation of yeast morphology remains unclear. In the past, each mutated gene from many mutants with abnormal morphology had to be classified manually. To investigate the morphological characteristics of yeast in detail, we developed a novel image-processing program that extracts quantitative data from microscope images automatically. This program extracts data on cells that are often used by yeast morphology researchers, such as cell size, roundness, bud neck position angle, and bud growth direction, and fits an ellipse to the cell outline. We evaluated the ability of the program to extract quantitative parameters. The results suggest that our image-processing program can play a central objective role in yeast morphology studies.

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Year:  2004        PMID: 15290760     DOI: 10.1142/s0219720004000363

Source DB:  PubMed          Journal:  J Bioinform Comput Biol        ISSN: 0219-7200            Impact factor:   1.122


  15 in total

1.  Evaluation of image processing programs for accurate measurement of budding and fission yeast morphology.

Authors:  Genjiro Suzuki; Hiroshi Sawai; Miwaka Ohtani; Satoru Nogami; Fumi Sano-Kumagai; Ayaka Saka; Masashi Yukawa; Taro L Saito; Jun Sese; Dai Hirata; Shinichi Morishita; Yoshikazu Ohya
Journal:  Curr Genet       Date:  2006-01-06       Impact factor: 3.886

2.  G1/S cyclin-dependent kinase regulates small GTPase Rho1p through phosphorylation of RhoGEF Tus1p in Saccharomyces cerevisiae.

Authors:  Keiko Kono; Satoru Nogami; Mitsuhiro Abe; Masafumi Nishizawa; Shinichi Morishita; David Pellman; Yoshikazu Ohya
Journal:  Mol Biol Cell       Date:  2008-02-06       Impact factor: 4.138

3.  High-dimensional and large-scale phenotyping of yeast mutants.

Authors:  Yoshikazu Ohya; Jun Sese; Masashi Yukawa; Fumi Sano; Yoichiro Nakatani; Taro L Saito; Ayaka Saka; Tomoyuki Fukuda; Satoru Ishihara; Satomi Oka; Genjiro Suzuki; Machika Watanabe; Aiko Hirata; Miwaka Ohtani; Hiroshi Sawai; Nicolas Fraysse; Jean-Paul Latgé; Jean M François; Markus Aebi; Seiji Tanaka; Sachiko Muramatsu; Hiroyuki Araki; Kintake Sonoike; Satoru Nogami; Shinichi Morishita
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-19       Impact factor: 11.205

4.  Multiple functional domains of the yeast l,3-beta-glucan synthase subunit Fks1p revealed by quantitative phenotypic analysis of temperature-sensitive mutants.

Authors:  Hiroki Okada; Mitsuhiro Abe; Masayo Asakawa-Minemura; Aiko Hirata; Hiroshi Qadota; Kana Morishita; Shinsuke Ohnuki; Satoru Nogami; Yoshikazu Ohya
Journal:  Genetics       Date:  2010-02-01       Impact factor: 4.562

5.  SCMD: Saccharomyces cerevisiae Morphological Database.

Authors:  Taro L Saito; Miwaka Ohtani; Hiroshi Sawai; Fumi Sano; Ayaka Saka; Daisuke Watanabe; Masashi Yukawa; Yoshikazu Ohya; Shinichi Morishita
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

6.  Computational methods for estimation of cell cycle phase distributions of yeast cells.

Authors:  Antti Niemistö; Matti Nykter; Tommi Aho; Henna Jalovaara; Kalle Marjanen; Miika Ahdesmäki; Pekka Ruusuvuori; Mikko Tiainen; Marja-Leena Linne; Olli Yli-Harja
Journal:  EURASIP J Bioinform Syst Biol       Date:  2007

7.  Yeast Rrp14p is a nucleolar protein involved in both ribosome biogenesis and cell polarity.

Authors:  Hiroko Yamada; Chihiro Horigome; Takafumi Okada; Chiharu Shirai; Keiko Mizuta
Journal:  RNA       Date:  2007-09-05       Impact factor: 4.942

8.  Comprehensive and quantitative analysis of yeast deletion mutants defective in apical and isotropic bud growth.

Authors:  Machika Watanabe; Daisuke Watanabe; Satoru Nogami; Shinichi Morishita; Yoshikazu Ohya
Journal:  Curr Genet       Date:  2009-05-24       Impact factor: 3.886

9.  Genetic profiling of protein burden and nuclear export overload.

Authors:  Reiko Kintaka; Koji Makanae; Shotaro Namba; Hisaaki Kato; Keiji Kito; Shinsuke Ohnuki; Yoshikazu Ohya; Brenda J Andrews; Charles Boone; Hisao Moriya
Journal:  Elife       Date:  2020-11-04       Impact factor: 8.140

10.  Light microscopy applications in systems biology: opportunities and challenges.

Authors:  Paul Michel Aloyse Antony; Christophe Trefois; Aleksandar Stojanovic; Aidos Sagatovich Baumuratov; Karol Kozak
Journal:  Cell Commun Signal       Date:  2013-04-11       Impact factor: 5.712

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