Literature DB >> 15289475

Comparative analysis of gene expression for convergent evolution of camera eye between octopus and human.

Atsushi Ogura1, Kazuho Ikeo, Takashi Gojobori.   

Abstract

Although the camera eye of the octopus is very similar to that of humans, phylogenetic and embryological analyses have suggested that their camera eyes have been acquired independently. It has been known as a typical example of convergent evolution. To study the molecular basis of convergent evolution of camera eyes, we conducted a comparative analysis of gene expression in octopus and human camera eyes. We sequenced 16,432 ESTs of the octopus eye, leading to 1052 nonredundant genes that have matches in the protein database. Comparing these 1052 genes with 13,303 already-known ESTs of the human eye, 729 (69.3%) genes were commonly expressed between the human and octopus eyes. On the contrary, when we compared octopus eye ESTs with human connective tissue ESTs, the expression similarity was quite low. To trace the evolutionary changes that are potentially responsible for camera eye formation, we also compared octopus-eye ESTs with the completed genome sequences of other organisms. We found that 1019 out of the 1052 genes had already existed at the common ancestor of bilateria, and 875 genes were conserved between humans and octopuses. It suggests that a larger number of conserved genes and their similar gene expression may be responsible for the convergent evolution of the camera eye. Copyright 2004 Cold Spring Harbor Laboratory Press ISSN

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Year:  2004        PMID: 15289475      PMCID: PMC509264          DOI: 10.1101/gr.2268104

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  24 in total

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2.  Creating the gene ontology resource: design and implementation.

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5.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
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Review 6.  Pax-6: where to be conserved is not conservative.

Authors:  W A Harris
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-18       Impact factor: 11.205

7.  Gene loss and gain in the evolution of the vertebrates.

Authors:  F H Ruddle; K L Bentley; M T Murtha; N Risch
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Review 8.  A good eye for arthropod evolution.

Authors:  D Osorio; J P Bacon
Journal:  Bioessays       Date:  1994-06       Impact factor: 4.345

9.  Six3 inactivation reveals its essential role for the formation and patterning of the vertebrate eye.

Authors:  Matthias Carl; Felix Loosli; Joachim Wittbrodt
Journal:  Development       Date:  2002-09       Impact factor: 6.868

10.  The evolutionary position of nematodes.

Authors:  Jaime E Blair; Kazuho Ikeo; Takashi Gojobori; S Blair Hedges
Journal:  BMC Evol Biol       Date:  2002-04-08       Impact factor: 3.260

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  25 in total

1.  Genome-wide transcript analysis of maize hybrids: allelic additive gene expression and yield heterosis.

Authors:  Mei Guo; Mary A Rupe; Xiaofeng Yang; Oswald Crasta; Christopher Zinselmeier; Oscar S Smith; Ben Bowen
Journal:  Theor Appl Genet       Date:  2006-07-26       Impact factor: 5.699

2.  Molecular Evidence for Convergence and Parallelism in Evolution of Complex Brains of Cephalopod Molluscs: Insights from Visual Systems.

Authors:  M A Yoshida; A Ogura; K Ikeo; S Shigeno; T Moritaki; G C Winters; A B Kohn; L L Moroz
Journal:  Integr Comp Biol       Date:  2015-05-21       Impact factor: 3.326

Review 3.  On the independent origins of complex brains and neurons.

Authors:  Leonid L Moroz
Journal:  Brain Behav Evol       Date:  2009-12-21       Impact factor: 1.808

4.  Genome-wide analysis of transcriptomic divergence between laboratory colony and field Anopheles gambiae mosquitoes of the M and S molecular forms.

Authors:  R Aguilar; F Simard; C Kamdem; T Shields; G E Glass; L S Garver; G Dimopoulos
Journal:  Insect Mol Biol       Date:  2010-08-05       Impact factor: 3.585

5.  Selection-driven transcriptome polymorphism in Escherichia coli/Shigella species.

Authors:  Tony Le Gall; Pierre Darlu; Patricia Escobar-Páramo; Bertrand Picard; Erick Denamur
Journal:  Genome Res       Date:  2005-02       Impact factor: 9.043

6.  Evolution of highly diverse forms of behavior in molluscs.

Authors:  Binyamin Hochner; David L Glanzman
Journal:  Curr Biol       Date:  2016-10-24       Impact factor: 10.834

7.  Critical symbiont signals drive both local and systemic changes in diel and developmental host gene expression.

Authors:  Silvia Moriano-Gutierrez; Eric J Koch; Hailey Bussan; Kymberleigh Romano; Mahdi Belcaid; Federico E Rey; Edward G Ruby; Margaret J McFall-Ngai
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-04       Impact factor: 11.205

8.  Selection of Phototransduction Genes in Homo sapiens.

Authors:  Mark Christopher; Todd E Scheetz; Robert F Mullins; Michael D Abràmoff
Journal:  Invest Ophthalmol Vis Sci       Date:  2013-08-13       Impact factor: 4.799

9.  Loss of the six3/6 controlling pathways might have resulted in pinhole-eye evolution in Nautilus.

Authors:  Atsushi Ogura; Masa-aki Yoshida; Takeya Moritaki; Yuki Okuda; Jun Sese; Kentaro K Shimizu; Konstantinos Sousounis; Panagiotis A Tsonis
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

10.  Comparison of gene expression profile of epiretinal membranes obtained from eyes with proliferative vitreoretinopathy to that of secondary epiretinal membranes.

Authors:  Ryo Asato; Shigeo Yoshida; Atsushi Ogura; Takahito Nakama; Keijiro Ishikawa; Shintaro Nakao; Yukio Sassa; Hiroshi Enaida; Yuji Oshima; Kazuho Ikeo; Takashi Gojobori; Toshihiro Kono; Tatsuro Ishibashi
Journal:  PLoS One       Date:  2013-01-23       Impact factor: 3.240

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