Literature DB >> 15288246

Tools for target identification and validation.

Shenliang Wang1, Tae Bo Sim, Yang-Suk Kim, Young-Tae Chang.   

Abstract

Reliable technologies for addressing target identification and validation are the foundation of successful drug development. Microarrays have been well utilized in genomics/proteomics approaches for gene/protein expression profiling and tissue/cell-scale target validation. Besides being used as an essential step in analyzing high-throughput experiments such as those involving microarrays, bioinformatics can also contribute to the processes of target identification and validation by providing functional information about target candidates and positioning information to biological networks. Antisense technologies (including RNA interference technology, which is recently very 'hot') enable sequence-based gene knockdown at the RNA level. Zinc finger proteins are a DNA transcription-targeting version of knockdown. Chemical genomics and proteomics are emerging tools for generating phenotype changes, thus leading to target and hit identifications. NMR-based screening, as well as activity-based protein profiling, are trying to meet the requirement of high-throughput target identification.

Mesh:

Substances:

Year:  2004        PMID: 15288246     DOI: 10.1016/j.cbpa.2004.06.001

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  13 in total

1.  Microarray detection of duplex and triplex DNA binders with DNA-modified gold nanoparticles.

Authors:  Abigail K R Lytton-Jean; Min Su Han; Chad A Mirkin
Journal:  Anal Chem       Date:  2007-07-06       Impact factor: 6.986

2.  Peptide deformylase is a potential target for anti-Helicobacter pylori drugs: reverse docking, enzymatic assay, and X-ray crystallography validation.

Authors:  Jianhua Cai; Cong Han; Tiancen Hu; Jian Zhang; Dalei Wu; Fangdao Wang; Yunqing Liu; Jianping Ding; Kaixian Chen; Jianmin Yue; Xu Shen; Hualiang Jiang
Journal:  Protein Sci       Date:  2006-08-01       Impact factor: 6.725

3.  Identification of a lacosamide binding protein using an affinity bait and chemical reporter strategy: 14-3-3 ζ.

Authors:  Ki Duk Park; Dongwook Kim; Onrapak Reamtong; Claire Eyers; Simon J Gaskell; Rihe Liu; Harold Kohn
Journal:  J Am Chem Soc       Date:  2011-07-06       Impact factor: 15.419

4.  Dataset of potential targets for Mycobacterium tuberculosis H37Rv through comparative genome analysis.

Authors:  Siddiqui M Asif; Amir Asad; Ahmad Faizan; Malik S Anjali; Arya Arvind; Kapoor Neelesh; Kumar Hirdesh; Kumar Sanjay
Journal:  Bioinformation       Date:  2009-12-31

5.  Prioritizing genomic drug targets in pathogens: application to Mycobacterium tuberculosis.

Authors:  Samiul Hasan; Sabine Daugelat; P S Srinivasa Rao; Mark Schreiber
Journal:  PLoS Comput Biol       Date:  2006-06-09       Impact factor: 4.475

Review 6.  Integration and mining of malaria molecular, functional and pharmacological data: how far are we from a chemogenomic knowledge space?

Authors:  Lyn-Marie Birkholtz; Olivier Bastien; Gordon Wells; Delphine Grando; Fourie Joubert; Vinod Kasam; Marc Zimmermann; Philippe Ortet; Nicolas Jacq; Nadia Saïdani; Sylvaine Roy; Martin Hofmann-Apitius; Vincent Breton; Abraham I Louw; Eric Maréchal
Journal:  Malar J       Date:  2006-11-17       Impact factor: 2.979

7.  A new computational strategy for predicting essential genes.

Authors:  Jian Cheng; Wenwu Wu; Yinwen Zhang; Xiangchen Li; Xiaoqian Jiang; Gehong Wei; Shiheng Tao
Journal:  BMC Genomics       Date:  2013-12-21       Impact factor: 3.969

8.  Computational prediction of essential genes in an unculturable endosymbiotic bacterium, Wolbachia of Brugia malayi.

Authors:  Alexander G Holman; Paul J Davis; Jeremy M Foster; Clotilde K S Carlow; Sanjay Kumar
Journal:  BMC Microbiol       Date:  2009-11-28       Impact factor: 3.605

9.  Quantitative analysis on the characteristics of targets with FDA approved drugs.

Authors:  Meena K Sakharkar; Peng Li; Zhaowei Zhong; Kishore R Sakharkar
Journal:  Int J Biol Sci       Date:  2007-12-10       Impact factor: 6.580

Review 10.  Applications of genetically modified tools to safety assessment in drug development.

Authors:  Hee Yeon Kay; Hongmin Wu; Seo In Lee; Sang Geon Kim
Journal:  Toxicol Res       Date:  2010-03
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.