Literature DB >> 15283912

Rapid mixing methods for exploring the kinetics of protein folding.

Heinrich Roder1, Kosuke Maki, Hong Cheng, M C Ramachandra Shastry.   

Abstract

Information on the time-dependence of molecular species is critical for elucidating reaction mechanisms in chemistry and biology. Rapid flow experiments involving turbulent mixing of two or more solutions continue to be the main source of kinetic information on protein folding and other biochemical processes, such as ligand binding and enzymatic reactions. Recent advances in mixer design and detection methods have opened a new window for exploring conformational changes in proteins on the microsecond time scale. These developments have been especially important for exploring early stages of protein folding.

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Year:  2004        PMID: 15283912     DOI: 10.1016/j.ymeth.2004.03.003

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  17 in total

1.  Visualizing transient protein-folding intermediates by tryptophan-scanning mutagenesis.

Authors:  Alexis Vallée-Bélisle; Stephen W Michnick
Journal:  Nat Struct Mol Biol       Date:  2012-06-10       Impact factor: 15.369

2.  T-jump infrared study of the folding mechanism of coiled-coil GCN4-p1.

Authors:  Ting Wang; Wai Leung Lau; William F DeGrado; Feng Gai
Journal:  Biophys J       Date:  2005-09-08       Impact factor: 4.033

3.  Do protein molecules unfold in a simple shear flow?

Authors:  Juan Jaspe; Stephen J Hagen
Journal:  Biophys J       Date:  2006-08-04       Impact factor: 4.033

4.  Coil-globule transition in the denatured state of a small protein.

Authors:  Eilon Sherman; Gilad Haran
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-20       Impact factor: 11.205

Review 5.  Early events in protein folding explored by rapid mixing methods.

Authors:  Heinrich Roder; Kosuke Maki; Hong Cheng
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

6.  Analysis of the kinetics of folding of proteins and peptides using circular dichroism.

Authors:  Norma J Greenfield
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

7.  A coarse-grained alpha-carbon protein model with anisotropic hydrogen-bonding.

Authors:  Eng-Hui Yap; Nicolas Lux Fawzi; Teresa Head-Gordon
Journal:  Proteins       Date:  2008-02-15

8.  Simultaneous Determination of Two Subdomain Folding Rates Using the "Transfer-Quench" Method.

Authors:  Gil Rahamim; Dan Amir; Elisha Haas
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

9.  Complex Folding Landscape of Apomyoglobin at Acidic pH Revealed by Ultrafast Kinetic Analysis of Core Mutants.

Authors:  Takuya Mizukami; Ming Xu; Ruzaliya Fazlieva; Valentina E Bychkova; Heinrich Roder
Journal:  J Phys Chem B       Date:  2018-08-31       Impact factor: 2.991

10.  A Native-like Intermediate Serves as a Branching Point between the Folding and Aggregation Pathways of the Mouse Prion Protein.

Authors:  Ryo P Honda; Ming Xu; Kei-Ichi Yamaguchi; Heinrich Roder; Kazuo Kuwata
Journal:  Structure       Date:  2015-08-06       Impact factor: 5.006

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