Literature DB >> 15280182

External quality assessment for mutation detection in the BRCA1 and BRCA2 genes: EMQN's experience of 3 years.

C R Mueller1, U Kristoffersson, D Stoppa-Lyonnet.   

Abstract

BACKGROUND: The European Molecular Genetics Quality Network (EMQN) was formed in order to improve external quality assessment for molecular genetic testing in Europe. From 1999 to 2002 it received funding from the European Union under the Standards, Measurement and Testing programme (contract no. SMT4-CT98-7515). Since then, its maintenance has been supported through subscription of the participants, and it has been coordinated by the National Genetic Reference Laboratory at Manchester, UK (Rob Elles and Simon Patton; www.emqn.org).
MATERIALS AND METHODS: Among other external quality assessment (EQA) schemes, EMQN has provided an EQA scheme for mutation detection in the breast cancer genes, BRCA1 and BRCA2, designed to cover the two important aspects of genetic testing: (i) genotyping and (ii) interpretation and reporting of results. The fourth full scheme was completed in 2003, with data evaluation pending for the 47 participants.
RESULTS: Analysis of genotyping data has pinpointed two main types of errors: (i) missing a mutation (in nine of the 17 false results a normal sequence was reported); and (ii) description of the observed sequence change by an incorrect nomenclature. Compared with the more technical process of genotyping, the writing of reports displayed a much wider variation between laboratories.
CONCLUSIONS: From the reported data it is clear that external quality control should become an integral part of quality assessment in the laboratory, thus contributing to maintaining confidence in the reliability of genetic testing among patients and health professionals. Copyright 2004 European Society for Medical Oncology

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Year:  2004        PMID: 15280182     DOI: 10.1093/annonc/mdh652

Source DB:  PubMed          Journal:  Ann Oncol        ISSN: 0923-7534            Impact factor:   32.976


  6 in total

Review 1.  Current landscape and new paradigms of proficiency testing and external quality assessment for molecular genetics.

Authors:  Lisa V Kalman; Ira M Lubin; Shannon Barker; Desiree du Sart; Rob Elles; Wayne W Grody; Mario Pazzagli; Sue Richards; Iris Schrijver; Barbara Zehnbauer
Journal:  Arch Pathol Lab Med       Date:  2013-07       Impact factor: 5.534

2.  Improvement of interpretation in cystic fibrosis clinical laboratory reports: longitudinal analysis of external quality assessment data.

Authors:  Sarah Berwouts; Emmanuelle Girodon; Martin Schwarz; Manfred Stuhrmann; Michael A Morris; Elisabeth Dequeker
Journal:  Eur J Hum Genet       Date:  2012-06-20       Impact factor: 4.246

3.  Development and implementation of the quality control panel of RT-PCR and real-time RT-PCR for avian influenza A (H5N1) surveillance network in mainland China.

Authors:  Rongbao Gao; Yan Gao; Leying Wen; Ming Shao; Shumei Zou; Changgui Li; Lei Yang; Xiyan Li; Wei Wang; Yuelong Shu
Journal:  BMC Infect Dis       Date:  2011-03-16       Impact factor: 3.090

4.  A reliable method for the detection of BRCA1 and BRCA2 mutations in fixed tumour tissue utilising multiplex PCR-based targeted next generation sequencing.

Authors:  Gillian Ellison; Shuwen Huang; Hedley Carr; Andrew Wallace; Miika Ahdesmaki; Sanjeev Bhaskar; John Mills
Journal:  BMC Clin Pathol       Date:  2015-03-24

5.  A comparative study of germline BRCA1 and BRCA2 mutation screening methods in use in 20 European clinical diagnostic laboratories.

Authors:  Gillian Ellison; Andrew Wallace; Alexander Kohlmann; Simon Patton
Journal:  Br J Cancer       Date:  2017-07-27       Impact factor: 7.640

6.  Variation in nomenclature of somatic variants for selection of oncological therapies: Can we reach a consensus soon?

Authors:  Cleo Keppens; Véronique Tack; Kelly Dufraing; Etienne Rouleau; Marjolijn J L Ligtenberg; Ed Schuuring; Elisabeth M C Dequeker
Journal:  Hum Mutat       Date:  2019-10-14       Impact factor: 4.878

  6 in total

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