Literature DB >> 15273285

Molecular-timetable methods for detection of body time and rhythm disorders from single-time-point genome-wide expression profiles.

Hiroki R Ueda1, Wenbin Chen, Yoichi Minami, Sato Honma, Kenichi Honma, Masamitsu Iino, Seiichi Hashimoto.   

Abstract

Detection of individual body time (BT) via a single-time-point assay has been a longstanding unfulfilled dream in medicine, because BT information can be exploited to maximize potency and minimize toxicity during drug administration and thus will enable highly optimized medication. To achieve this dream, we created a "molecular timetable" composed of >100 "time-indicating genes," whose gene expression levels can represent internal BT. Here we describe a robust method called the "molecular-timetable method" for BT detection from a single-time-point expression profile. The power of this method is demonstrated by the sensitive and accurate detection of BT and the sensitive diagnosis of rhythm disorders. These results demonstrate the feasibility of BT detection based on single-time-point sampling, suggest the potential for expression-based diagnosis of rhythm disorders, and may translate functional genomics into chronotherapy and personalized medicine.

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Mesh:

Year:  2004        PMID: 15273285      PMCID: PMC509173          DOI: 10.1073/pnas.0401882101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  Changing the dosing schedule minimizes the disruptive effects of interferon on clock function.

Authors:  S Ohdo; S Koyanagi; H Suyama; S Higuchi; H Aramaki
Journal:  Nat Med       Date:  2001-03       Impact factor: 53.440

2.  Circadian cycling of the mouse liver transcriptome, as revealed by cDNA microarray, is driven by the suprachiasmatic nucleus.

Authors:  Ruth A Akhtar; Akhilesh B Reddy; Elizabeth S Maywood; Jonathan D Clayton; Verdun M King; Andrew G Smith; Timothy W Gant; Michael H Hastings; Charalambos P Kyriacou
Journal:  Curr Biol       Date:  2002-04-02       Impact factor: 10.834

3.  Circadian programs of transcriptional activation, signaling, and protein turnover revealed by microarray analysis of mammalian cells.

Authors:  Giles E Duffield; Jonathan D Best; Bernhard H Meurers; Anton Bittner; Jennifer J Loros; Jay C Dunlap
Journal:  Curr Biol       Date:  2002-04-02       Impact factor: 10.834

Review 4.  Molecular bases for circadian clocks.

Authors:  J C Dunlap
Journal:  Cell       Date:  1999-01-22       Impact factor: 41.582

5.  Circadian regulation of gene expression systems in the Drosophila head.

Authors:  A Claridge-Chang; H Wijnen; F Naef; C Boothroyd; N Rajewsky; M W Young
Journal:  Neuron       Date:  2001-11-20       Impact factor: 17.173

6.  Angiotensin II induces circadian gene expression of clock genes in cultured vascular smooth muscle cells.

Authors:  H Nonaka; N Emoto; K Ikeda; H Fukuya; M S Rohman; S B Raharjo; K Yagita; H Okamura; M Yokoyama
Journal:  Circulation       Date:  2001-10-09       Impact factor: 29.690

7.  Microarray analysis and organization of circadian gene expression in Drosophila.

Authors:  M J McDonald; M Rosbash
Journal:  Cell       Date:  2001-11-30       Impact factor: 41.582

8.  Resetting central and peripheral circadian oscillators in transgenic rats.

Authors:  S Yamazaki; R Numano; M Abe; A Hida; R Takahashi; M Ueda; G D Block; Y Sakaki; M Menaker; H Tei
Journal:  Science       Date:  2000-04-28       Impact factor: 47.728

9.  Genome-wide transcriptional orchestration of circadian rhythms in Drosophila.

Authors:  Hiroki R Ueda; Akira Matsumoto; Miho Kawamura; Masamitsu Iino; Teiichi Tanimura; Seiichi Hashimoto
Journal:  J Biol Chem       Date:  2002-02-19       Impact factor: 5.157

10.  Circadian expression of clock genes in human oral mucosa and skin: association with specific cell-cycle phases.

Authors:  G A Bjarnason; R C Jordan; P A Wood; Q Li; D W Lincoln; R B Sothern; W J Hrushesky; Y Ben-David
Journal:  Am J Pathol       Date:  2001-05       Impact factor: 4.307

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  52 in total

1.  Noninvasive method for assessing the human circadian clock using hair follicle cells.

Authors:  Makoto Akashi; Haruhiko Soma; Takuro Yamamoto; Asuka Tsugitomi; Shiko Yamashita; Takuya Yamamoto; Eisuke Nishida; Akio Yasuda; James K Liao; Koichi Node
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-23       Impact factor: 11.205

2.  High-accuracy determination of internal circadian time from a single blood sample.

Authors:  Nicole Wittenbrink; Bharath Ananthasubramaniam; Mirjam Münch; Barbara Koller; Bert Maier; Charlotte Weschke; Frederik Bes; Jan de Zeeuw; Claudia Nowozin; Amely Wahnschaffe; Sophia Wisniewski; Mandy Zaleska; Osnat Bartok; Reut Ashwal-Fluss; Hedwig Lammert; Hanspeter Herzel; Michael Hummel; Sebastian Kadener; Dieter Kunz; Achim Kramer
Journal:  J Clin Invest       Date:  2018-08-06       Impact factor: 14.808

3.  The potential influence of the microbiota and probiotics on women during long spaceflights.

Authors:  Camilla Urbaniak; Gregor Reid
Journal:  Womens Health (Lond)       Date:  2016-02-22

4.  Compass in the data ocean: Toward chronotherapy.

Authors:  Rikuhiro G Yamada; Hiroki R Ueda
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-09       Impact factor: 11.205

5.  Mass spectrometry-based absolute quantification reveals rhythmic variation of mouse circadian clock proteins.

Authors:  Ryohei Narumi; Yoshihiro Shimizu; Maki Ukai-Tadenuma; Koji L Ode; Genki N Kanda; Yuta Shinohara; Aya Sato; Katsuhiko Matsumoto; Hiroki R Ueda
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-31       Impact factor: 11.205

6.  Relationship between daylength and suicide in Finland.

Authors:  Laura Hiltunen; Kirsi Suominen; Jouko Lönnqvist; Timo Partonen
Journal:  J Circadian Rhythms       Date:  2011-09-23

7.  Punctual transcriptional regulation by the rice circadian clock under fluctuating field conditions.

Authors:  Jun Matsuzaki; Yoshihiro Kawahara; Takeshi Izawa
Journal:  Plant Cell       Date:  2015-03-10       Impact factor: 11.277

8.  Network quantitative trait loci mapping of circadian clock outputs identifies metabolic pathway-to-clock linkages in Arabidopsis.

Authors:  Rachel E Kerwin; Jose M Jimenez-Gomez; Daniel Fulop; Stacey L Harmer; Julin N Maloof; Daniel J Kliebenstein
Journal:  Plant Cell       Date:  2011-02-22       Impact factor: 11.277

9.  CYCLOPS reveals human transcriptional rhythms in health and disease.

Authors:  Ron C Anafi; Lauren J Francey; John B Hogenesch; Junhyong Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-24       Impact factor: 11.205

Review 10.  Plant Immune Mechanisms: From Reductionistic to Holistic Points of View.

Authors:  Jie Zhang; Gitta Coaker; Jian-Min Zhou; Xinnian Dong
Journal:  Mol Plant       Date:  2020-09-08       Impact factor: 13.164

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