Literature DB >> 15271778

Microarray Data Analysis Toolbox (MDAT): for normalization, adjustment and analysis of gene expression data.

Nicholas Knowlton1, Igor M Dozmorov, Michael Centola.   

Abstract

SUMMARY: We introduce a novel Matlab toolbox for microarray data analysis. This toolbox uses normalization based upon a normally distributed background and differential gene expression based on five statistical measures. The objects in this toolbox are open source and can be implemented to suit your application. AVAILABILITY: MDAT v1.0 is a Matlab toolbox and requires Matlab to run. MDAT is freely available at http://microarray.omrf.org/publications/2004/knowlton/MDAT.zip.

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Year:  2004        PMID： 15271778     DOI： 10.1093/bioinformatics/bth424

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  14 in total

1.  Transcriptional modulation of TCR, Notch and Wnt signaling pathways in SEB-anergized CD4+ T cells.

Authors:  S Kurella; J C Yaciuk; I Dozmorov; M B Frank; M Centola; A D Farris
Journal:  Genes Immun       Date:  2005-10       Impact factor: 2.676

2.  Unique patterns of molecular profiling between human prostate cancer LNCaP and PC-3 cells.

Authors:  Mikhail G Dozmorov; Robert E Hurst; Daniel J Culkin; Bradley P Kropp; Mark Barton Frank; Jeanette Osban; Trevor M Penning; Hsueh-Kung Lin
Journal:  Prostate       Date:  2009-07-01       Impact factor: 4.104

3.  Elevated AKR1C3 expression promotes prostate cancer cell survival and prostate cell-mediated endothelial cell tube formation: implications for prostate cancer progression.

Authors:  Mikhail G Dozmorov; Joseph T Azzarello; Jonathan D Wren; Kar-Ming Fung; Qing Yang; Jeffrey S Davis; Robert E Hurst; Daniel J Culkin; Trevor M Penning; Hsueh-Kung Lin
Journal:  BMC Cancer       Date:  2010-12-06       Impact factor: 4.430

4.  Anthrax lethal toxin-induced gene expression changes in mouse lung.

Authors:  Eric K Dumas; Philip M Cox; Charles O'Connor Fullenwider; Melissa Nguyen; Michael Centola; Mark Barton Frank; Igor Dozmorov; Judith A James; A Darise Farris
Journal:  Toxins (Basel)       Date:  2011-09-07       Impact factor: 4.546

5.  Effects of IRF5 lupus risk haplotype on pathways predicted to influence B cell functions.

Authors:  Joel M Guthridge; Daniel N Clark; Amanda Templeton; Nicolas Dominguez; Rufei Lu; Gabriel S Vidal; Jennifer A Kelly; Kenneth M Kauffman; John B Harley; Patrick M Gaffney; Judith A James; Brian D Poole
Journal:  J Biomed Biotechnol       Date:  2012-02-22

6.  A dynamic model of gene expression in monocytes reveals differences in immediate/early response genes between adult and neonatal cells.

Authors:  Shelley Lawrence; Yuhong Tang; M Barton Frank; Igor Dozmorov; Kaiyu Jiang; Yanmin Chen; Craig Cadwell; Sean Turner; Michael Centola; James N Jarvis
Journal:  J Inflamm (Lond)       Date:  2007-02-16       Impact factor: 4.981

7.  Gene expression analysis of biological systems driving an organotypic model of endometrial carcinogenesis and chemoprevention.

Authors:  Doris M Benbrook; Stan Lightfoot; James Ranger-Moore; Tongzu Liu; Shylet Chengedza; William L Berry; Igor Dozmorov
Journal:  Gene Regul Syst Bio       Date:  2008

8.  Internal standard-based analysis of microarray data. Part 1: analysis of differential gene expressions.

Authors:  Igor Dozmorov; Ivan Lefkovits
Journal:  Nucleic Acids Res       Date:  2009-08-31       Impact factor: 16.971

9.  Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB.

Authors:  Aristotelis Chatziioannou; Panagiotis Moulos; Fragiskos N Kolisis
Journal:  BMC Bioinformatics       Date:  2009-10-27       Impact factor: 3.169

10.  Gene expression profiling of human alveolar macrophages infected by B. anthracis spores demonstrates TNF-alpha and NF-kappab are key components of the innate immune response to the pathogen.

Authors:  Mikhail Dozmorov; Wenxin Wu; Kaushik Chakrabarty; J Leland Booth; Robert E Hurst; K Mark Coggeshall; Jordan P Metcalf
Journal:  BMC Infect Dis       Date:  2009-09-10       Impact factor: 3.090
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