Literature DB >> 15271776

EC_oligos: automated and whole-genome primer design for exons within one or between two genomes.

Shaolin Liu1, Nicholas A Tinker, Stephen J Molnar, Diane E Mather.   

Abstract

SUMMARY: EC_oligos designs oligonucleotides (oligos) from exons of annotated genomic sequence information. It can automatically and rapidly select oligos that are conserved between two sets of sequence data, and can pair up oligos for use as PCR primers. It can do this on a whole-genome scale and according to user-defined criteria. AVAILABILITY: The source code, executable program and user manual are available at ftp://ftp.ebi.ac.uk/pub/software/dos/EC_oligos/.

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Year:  2004        PMID： 15271776     DOI： 10.1093/bioinformatics/bth413

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  3 in total

1.  Leveraging the rice genome sequence for monocot comparative and translational genomics.

Authors:  H C Lohithaswa; F A Feltus; H P Singh; C D Bacon; C D Bailey; A H Paterson
Journal:  Theor Appl Genet       Date:  2007-05-24       Impact factor: 5.699

2.  A comparative genomics strategy for targeted discovery of single-nucleotide polymorphisms and conserved-noncoding sequences in orphan crops.

Authors:  F A Feltus; H P Singh; H C Lohithaswa; S R Schulze; T D Silva; A H Paterson
Journal:  Plant Physiol       Date:  2006-04       Impact factor: 8.340

3.  A general framework for designing and validating oligomer-based DNA microarrays and its application to Clostridium acetobutylicum.

Authors:  Carlos J Paredes; Ryan S Senger; Iwona S Spath; Jacob R Borden; Ryan Sillers; Eleftherios T Papoutsakis
Journal:  Appl Environ Microbiol       Date:  2007-05-25       Impact factor: 4.792
  3 in total

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