Literature DB >> 15267573

Thermodynamics of lattice heteropolymers.

Michael Bachmann1, Wolfhard Janke.   

Abstract

We calculate thermodynamic quantities of hydrophobic-polar (HP) lattice proteins by means of a multicanonical chain-growth algorithm that connects the new variants of the Pruned-Enriched Rosenbluth Method and flat histogram sampling of the entire energy space. Since our method directly simulates the density of states, we obtain results for thermodynamic quantities of the system for all temperatures. In particular, this algorithm enables us to accurately simulate the usually difficult accessible low-temperature region. Therefore, it becomes possible to perform detailed analyses of the low-temperature transition between ground states and compact globules. (c) 2004 American Institute of Physics

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Year:  2004        PMID: 15267573     DOI: 10.1063/1.1651055

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  3 in total

1.  Monte Carlo simulations of the HP model (the "Ising model" of protein folding).

Authors:  Ying Wai Li; Thomas Wüst; David P Landau
Journal:  Comput Phys Commun       Date:  2011-09-01       Impact factor: 4.390

2.  Interplay of Coil-Globule Transition and Surface Adsorption of a Lattice HP Protein Model.

Authors:  Meng-Bo Luo; Jesse D Ziebarth; Yongmei Wang
Journal:  J Phys Chem B       Date:  2014-12-11       Impact factor: 2.991

3.  Revisiting the myths of protein interior: studying proteins with mass-fractal hydrophobicity-fractal and polarizability-fractal dimensions.

Authors:  Anirban Banerji; Indira Ghosh
Journal:  PLoS One       Date:  2009-10-16       Impact factor: 3.240

  3 in total

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