Literature DB >> 15267343

Many-body potentials for aqueous Li(+), Na(+), Mg(2+), and Al(3+): comparison of effective three-body potentials and polarizable models.

Daniel Spångberg1, Kersti Hermansson.   

Abstract

Many-body potentials for the aqueous Li(+), Na(+), Mg(2+), and Al(3+) ions have been constructed from ab initio cluster calculations. Pure pair, effective pair, effective three-body, and effective polarizable models were created and used in subsequent molecular dynamics simulations. The structures of the first and second solvation shells were studied using radial distribution functions and angular-radial distribution functions. The effective three-body and polarizable potentials yield similar first-shell structures, while the contraction of the O-O distances between the first and second solvation shells is more pronounced with the polarizable potentials. The definition of the tilt angle of the water molecules around the ions is discussed. When a proper definition is used, it is found that for Li(+), Mg(2+), and Al(3+) the water molecules prefer a trigonal orientation, but for Na(+) a tetrahedral orientation (ion in lone-pair direction) is preferred. The self-diffusion coefficients for the water molecules and the ions were calculated; the ionic values follow the order obtained from experiment, although the simulated absolute values are smaller than experiment for Mg(2+) and Al(3+).

Entities:  

Year:  2004        PMID: 15267343     DOI: 10.1063/1.1641191

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  5 in total

1.  Ion-Hydroxyl Interactions: From High-Level Quantum Benchmarks to Transferable Polarizable Force Fields.

Authors:  Vered Wineman-Fisher; Yasmine Al-Hamdani; Iqbal Addou; Alexandre Tkatchenko; Sameer Varma
Journal:  J Chem Theory Comput       Date:  2019-03-13       Impact factor: 6.006

2.  Comparison of structural, thermodynamic, kinetic and mass transport properties of Mg(2+) ion models commonly used in biomolecular simulations.

Authors:  Maria T Panteva; George M Giambaşu; Darrin M York
Journal:  J Comput Chem       Date:  2015-03-04       Impact factor: 3.376

3.  The structure of water in the hydration shell of cations from x-ray Raman and small angle x-ray scattering measurements.

Authors:  Iradwikanari Waluyo; Congcong Huang; Dennis Nordlund; Uwe Bergmann; Thomas M Weiss; Lars G M Pettersson; Anders Nilsson
Journal:  J Chem Phys       Date:  2011-02-14       Impact factor: 3.488

4.  Force Field for Mg(2+), Mn(2+), Zn(2+), and Cd(2+) Ions That Have Balanced Interactions with Nucleic Acids.

Authors:  Maria T Panteva; George M Giambaşu; Darrin M York
Journal:  J Phys Chem B       Date:  2015-12-03       Impact factor: 2.991

5.  Unraveling Mg2+-RNA binding with atomistic molecular dynamics.

Authors:  Richard A Cunha; Giovanni Bussi
Journal:  RNA       Date:  2017-02-01       Impact factor: 4.942

  5 in total

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