Literature DB >> 15261653

Models of cell signaling pathways.

Upinder S Bhalla1.   

Abstract

Cellular signaling circuits handle an enormous range of computations. Beyond the housekeeping, replicating and other functions of individual cells, signaling circuits must implement the immensely complex logic of development and function of multicellular organisms. Computer models are useful tools to understand this complexity. Recent studies have extended such models to include electrical, mechanical and spatial details of signaling, and to address the stochastic effects that arise when small numbers of molecules interact. Increasing numbers of models have been developed in close conjunction with experiments, and this interplay gives a deeper and more reliable insight into signaling function. Copyright 2004 Elsevier Ltd.

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Year:  2004        PMID: 15261653     DOI: 10.1016/j.gde.2004.05.002

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  10 in total

1.  Timescale analysis of rule-based biochemical reaction networks.

Authors:  David J Klinke; Stacey D Finley
Journal:  Biotechnol Prog       Date:  2011-09-26

Review 2.  Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway.

Authors:  Richard J Orton; Oliver E Sturm; Vladislav Vyshemirsky; Muffy Calder; David R Gilbert; Walter Kolch
Journal:  Biochem J       Date:  2005-12-01       Impact factor: 3.857

3.  STEPS: Modeling and Simulating Complex Reaction-Diffusion Systems with Python.

Authors:  Stefan Wils; Erik De Schutter
Journal:  Front Neuroinform       Date:  2009-06-29       Impact factor: 4.081

Review 4.  A multiscale systems perspective on cancer, immunotherapy, and Interleukin-12.

Authors:  David J Klinke
Journal:  Mol Cancer       Date:  2010-09-15       Impact factor: 27.401

5.  Probability-based model of protein-protein interactions on biological timescales.

Authors:  Alexander L Tournier; Paul W Fitzjohn; Paul A Bates
Journal:  Algorithms Mol Biol       Date:  2006-12-11       Impact factor: 1.405

Review 6.  ROS-Influenced Regulatory Cross-Talk With Wnt Signaling Pathway During Perinatal Development.

Authors:  Sharmistha Chatterjee; Parames C Sil
Journal:  Front Mol Biosci       Date:  2022-04-19

7.  Dominant role of adult neurogenesis-induced structural heterogeneities in driving plasticity heterogeneity in dentate gyrus granule cells.

Authors:  Sameera Shridhar; Poonam Mishra; Rishikesh Narayanan
Journal:  Hippocampus       Date:  2022-05-13       Impact factor: 3.753

8.  A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience.

Authors:  João P G Santos; Kadri Pajo; Daniel Trpevski; Andrey Stepaniuk; Olivia Eriksson; Anu G Nair; Daniel Keller; Jeanette Hellgren Kotaleski; Andrei Kramer
Journal:  Neuroinformatics       Date:  2021-10-28

9.  An essential role for the SHIP2-dependent negative feedback loop in neuritogenesis of nerve growth factor-stimulated PC12 cells.

Authors:  Kazuhiro Aoki; Takeshi Nakamura; Takanari Inoue; Tobias Meyer; Michiyuki Matsuda
Journal:  J Cell Biol       Date:  2007-05-29       Impact factor: 10.539

10.  Active dendrites regulate the spatiotemporal spread of signaling microdomains.

Authors:  Reshma Basak; Rishikesh Narayanan
Journal:  PLoS Comput Biol       Date:  2018-11-01       Impact factor: 4.475

  10 in total

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