Literature DB >> 15260486

Altered hydrogen bonding of Arg82 during the proton pump cycle of bacteriorhodopsin: a low-temperature polarized FTIR spectroscopic study.

Taro Tanimoto1, Mikihiro Shibata, Marina Belenky, Judith Herzfeld, Hideki Kandori.   

Abstract

Light-driven proton transport in bacteriorhodopsin (BR) is achieved by dynamic rearrangement of the hydrogen-bonding network inside the membrane protein. Arg82 is located between the Schiff base region and proton release group, and has a major influence on the pK(a) values of these groups. It is believed that Arg82 changes its hydrogen-bonding acceptors during the pump cycle of BR, stages of which are correlated with proton movement along the transport pathway. In this study, we compare low-temperature polarized FTIR spectra of [eta(1,2)-(15)N]arginine-labeled BR in the 2750-2000 cm(-1) region with those of unlabeled BR for the K, L, M, and N intermediates. In the K-minus-BR difference spectra, (15)N-shifted modes were found at 2292 (-)/2266 (+) cm(-1) and at 2579 (-)/2567 (+) cm(-1). The former corresponds to strong hydrogen bonding, while the latter corresponds to very weak hydrogen bonding. Both N-D stretches probably originate from Arg82, the former oriented toward water 406 and the latter toward the extracellular side, and both hydrogen bonds are somewhat strengthened upon retinal photoisomerization. This perturbation of arginine hydrogen bonding is entirely relaxed in the L intermediate where no (15)N-isotope shifts are observed in the difference spectrum. In the M intermediate, the frequency is not significantly altered from that in BR. However, the polarized FTIR spectra strongly suggest that the dipolar orientation of the strongly hydrogen bonded N-D group of Arg82 is changed from perpendicular to parallel to the membrane plane. Such a change is presumably related to the motion of the Arg82 side chain from the Schiff base region to the extracellular proton release group. Additional bands corresponding to weak hydrogen bonding were observed in both the M-minus-BR and N-minus-BR spectra. Changes in hydrogen-bonding structures involving Arg82 are discussed on the basis of these FTIR observations.

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Year:  2004        PMID: 15260486     DOI: 10.1021/bi049368p

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  6 in total

1.  Fourier-transform infrared study of the photoactivation process of Xenopus (6-4) photolyase.

Authors:  Daichi Yamada; Yu Zhang; Tatsuya Iwata; Kenichi Hitomi; Elizabeth D Getzoff; Hideki Kandori
Journal:  Biochemistry       Date:  2012-07-13       Impact factor: 3.162

2.  Coordinating the structural rearrangements associated with unidirectional proton transfer in the bacteriorhodopsin photocycle induced by deprotonation of the proton-release group: a time-resolved difference FTIR spectroscopic study.

Authors:  Joel E Morgan; Ahmet S Vakkasoglu; Janos K Lanyi; Robert B Gennis; Akio Maeda
Journal:  Biochemistry       Date:  2010-04-20       Impact factor: 3.162

Review 3.  Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations.

Authors:  M R Gunner; Junjun Mao; Yifan Song; Jinrang Kim
Journal:  Biochim Biophys Acta       Date:  2006-06-17

4.  pH dependence of light-driven proton pumping by an archaerhodopsin from Tibet: comparison with bacteriorhodopsin.

Authors:  Ming Ming; Miao Lu; Sergei P Balashov; Thomas G Ebrey; Qingguo Li; Jiandong Ding
Journal:  Biophys J       Date:  2006-02-10       Impact factor: 4.033

Review 5.  Isotope-edited IR spectroscopy for the study of membrane proteins.

Authors:  Isaiah T Arkin
Journal:  Curr Opin Chem Biol       Date:  2006-08-28       Impact factor: 8.822

6.  Schizorhodopsins: A family of rhodopsins from Asgard archaea that function as light-driven inward H+ pumps.

Authors:  Keiichi Inoue; Satoshi P Tsunoda; Manish Singh; Sahoko Tomida; Shoko Hososhima; Masae Konno; Ryoko Nakamura; Hiroki Watanabe; Paul-Adrian Bulzu; Horia L Banciu; Adrian-Ştefan Andrei; Takayuki Uchihashi; Rohit Ghai; Oded Béjà; Hideki Kandori
Journal:  Sci Adv       Date:  2020-04-10       Impact factor: 14.136

  6 in total

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