Literature DB >> 15251436

On the origin of the electrostatic barrier for proton transport in aquaporin.

Anton Burykin1, Arieh Warshel.   

Abstract

The nature of the electrostatic barrier for proton transport in aquaporins is analyzed by semimacroscopic and microscopic models. It is found that the barrier is associated with the loss of the generalized solvation energy upon moving from the bulk solvent to the center of the channel. It is clarified that our solvation concept includes the effect of the protein polar groups and ionized residues. The nature of the contributions to the solvation barrier is examined by using the linear response approximation. It is found that the residues in the NPA region contribute much less than what would be deduced from calculations that do not consider the protein reorganization. It is clarified that the contributions of different structural or electrostatic elements to the solvation barrier can be established by removing these elements and examining the corresponding effect on the barrier height. Using this definition and "mutating" the NPA residues to their non-polar analogues establishes that these residues do not provide the major contribution to the solvation barrier.

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Year:  2004        PMID: 15251436     DOI: 10.1016/j.febslet.2004.06.020

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  20 in total

1.  Inverting the selectivity of aquaporin 6: gating versus direct electrostatic interaction.

Authors:  Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-31       Impact factor: 11.205

2.  Charge delocalization in proton channels, I: the aquaporin channels and proton blockage.

Authors:  Hanning Chen; Boaz Ilan; Yujie Wu; Fangqiang Zhu; Klaus Schulten; Gregory A Voth
Journal:  Biophys J       Date:  2006-10-20       Impact factor: 4.033

Review 3.  Proton solvation and transport in aqueous and biomolecular systems: insights from computer simulations.

Authors:  Jessica M J Swanson; C Mark Maupin; Hanning Chen; Matt K Petersen; Jiancong Xu; Yujie Wu; Gregory A Voth
Journal:  J Phys Chem B       Date:  2007-04-13       Impact factor: 2.991

Review 4.  Philosophy of voltage-gated proton channels.

Authors:  Thomas E DeCoursey; Jonathan Hosler
Journal:  J R Soc Interface       Date:  2013-12-18       Impact factor: 4.118

5.  High apparent dielectric constant inside a protein reflects structural reorganization coupled to the ionization of an internal Asp.

Authors:  Daniel A Karp; Apostolos G Gittis; Mary R Stahley; Carolyn A Fitch; Wesley E Stites; Bertrand García-Moreno E
Journal:  Biophys J       Date:  2006-12-15       Impact factor: 4.033

6.  Hydroxide and proton migration in aquaporins.

Authors:  Morten Ø Jensen; Ursula Röthlisberger; Carme Rovira
Journal:  Biophys J       Date:  2005-06-10       Impact factor: 4.033

7.  Origins of proton transport behavior from selectivity domain mutations of the aquaporin-1 channel.

Authors:  Hanning Chen; Yujie Wu; Gregory A Voth
Journal:  Biophys J       Date:  2006-03-31       Impact factor: 4.033

8.  The energetics of the primary proton transfer in bacteriorhodopsin revisited: it is a sequential light-induced charge separation after all.

Authors:  Sonja Braun-Sand; Pankaz K Sharma; Zhen T Chu; Andrei V Pisliakov; Arieh Warshel
Journal:  Biochim Biophys Acta       Date:  2008-03-14

Review 9.  Progress in ab initio QM/MM free-energy simulations of electrostatic energies in proteins: accelerated QM/MM studies of pKa, redox reactions and solvation free energies.

Authors:  Shina C L Kamerlin; Maciej Haranczyk; Arieh Warshel
Journal:  J Phys Chem B       Date:  2009-02-05       Impact factor: 2.991

10.  Crystal structure of human aquaporin 4 at 1.8 A and its mechanism of conductance.

Authors:  Joseph D Ho; Ronald Yeh; Andrew Sandstrom; Ilya Chorny; William E C Harries; Rebecca A Robbins; Larry J W Miercke; Robert M Stroud
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-21       Impact factor: 11.205

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