Literature DB >> 15250633

Automatic identification of bacterial types using statistical imaging methods.

Sigal Trattner1, Hayit Greenspan, Gabi Tepper, Shimon Abboud.   

Abstract

The objective of the current study is to develop an automatic tool to identify microbiological data types using computer-vision and statistical modeling techniques. Bacteriophage (phage) typing methods are used to identify and extract representative profiles of bacterial types out of species such as the Staphylococcus aureus. Current systems rely on the subjective reading of profiles by a human expert. This process is time-consuming and prone to errors, especially as technology is enabling the increase in the number of phages used for typing. The statistical methodology presented in this work, provides for an automated, objective and robust analysis of visual data, along with the ability to cope with increasing data volumes.

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Year:  2004        PMID: 15250633     DOI: 10.1109/TMI.2004.827481

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  4 in total

1.  Automated segmentation and classification of high throughput yeast assay spots.

Authors:  Kourosh Jafari-Khouzani; Hamid Soltanian-Zadeh; Farshad Fotouhi; Jodi R Parrish; Russell L Finley
Journal:  IEEE Trans Med Imaging       Date:  2007-10       Impact factor: 10.048

2.  Deep learning approach to bacterial colony classification.

Authors:  Bartosz Zieliński; Anna Plichta; Krzysztof Misztal; Przemysław Spurek; Monika Brzychczy-Włoch; Dorota Ochońska
Journal:  PLoS One       Date:  2017-09-14       Impact factor: 3.240

3.  Automated identification of Monogeneans using digital image processing and K-nearest neighbour approaches.

Authors:  Elham Yousef Kalafi; Wooi Boon Tan; Christopher Town; Sarinder Kaur Dhillon
Journal:  BMC Bioinformatics       Date:  2016-12-22       Impact factor: 3.169

4.  SSNOMBACTER: A collection of scattering-type scanning near-field optical microscopy and atomic force microscopy images of bacterial cells.

Authors:  Massimiliano Lucidi; Denis E Tranca; Lorenzo Nichele; Devrim Ünay; George A Stanciu; Paolo Visca; Alina Maria Holban; Radu Hristu; Gabriella Cincotti; Stefan G Stanciu
Journal:  Gigascience       Date:  2020-11-24       Impact factor: 6.524

  4 in total

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