Literature DB >> 15247498

The IUBMB-endorsed transporter classification system.

Wolfgang Busch1, Milton H Saier.   

Abstract

We here describe the transporter classification (TC) system that provides a rational means of classifying all transmembrane transport systems found in living organisms. The availability of this system provides a framework for the use of bioinformatic technologies to answer fundamental questions about the functions, mechanisms, and evolutionary pathways taken for the appearance of these systems. Such advances are discussed.

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Year:  2004        PMID： 15247498     DOI： 10.1385/mb:27:3:253

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN： 1073-6085            Impact factor:   2.695


  13 in total

1.  Is FatP a long-chain fatty acid transporter?

Authors:  M H Saier; J M Kollman
Journal:  Mol Microbiol       Date:  1999-08       Impact factor: 3.501

Review 2.  A functional-phylogenetic classification system for transmembrane solute transporters.

Authors:  M H Saier
Journal:  Microbiol Mol Biol Rev       Date:  2000-06       Impact factor: 11.056

3.  AL2CO: calculation of positional conservation in a protein sequence alignment.

Authors:  J Pei; N V Grishin
Journal:  Bioinformatics       Date:  2001-08       Impact factor: 6.937

4.  A web-based program (WHAT) for the simultaneous prediction of hydropathy, amphipathicity, secondary structure and transmembrane topology for a single protein sequence.

Authors:  Y Zhai; M H Saier
Journal:  J Mol Microbiol Biotechnol       Date:  2001-10

Review 5.  Vectorial metabolism and the evolution of transport systems.

Authors:  M H Saier
Journal:  J Bacteriol       Date:  2000-09       Impact factor: 3.490

Review 6.  The transporter classification (TC) system, 2002.

Authors:  Wolfgang Busch; Milton H Saier
Journal:  Crit Rev Biochem Mol Biol       Date:  2002       Impact factor: 8.250

7.  The Acyl-CoA synthetases encoded within FAA1 and FAA4 in Saccharomyces cerevisiae function as components of the fatty acid transport system linking import, activation, and intracellular Utilization.

Authors:  N J Faergeman; P N Black; X D Zhao; J Knudsen; C C DiRusso
Journal:  J Biol Chem       Date:  2001-07-27       Impact factor: 5.157

Review 8.  Computer-aided analyses of transport protein sequences: gleaning evidence concerning function, structure, biogenesis, and evolution.

Authors:  M H Saier
Journal:  Microbiol Rev       Date:  1994-03

9.  TopPred II: an improved software for membrane protein structure predictions.

Authors:  M G Claros; G von Heijne
Journal:  Comput Appl Biosci       Date:  1994-12

Review 10.  Genome sequence of the nematode C. elegans: a platform for investigating biology.

Authors: 
Journal:  Science       Date:  1998-12-11       Impact factor: 47.728
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  24 in total

Review 1.  The 2-hydroxycarboxylate transporter family: physiology, structure, and mechanism.

Authors:  Iwona Sobczak; Juke S Lolkema
Journal:  Microbiol Mol Biol Rev       Date:  2005-12       Impact factor: 11.056

Review 2.  Stable isotope dilution mass spectrometry for membrane transporter quantitation.

Authors:  Vahid Farrokhi; Adam J McShane; Reza Nemati; Xudong Yao
Journal:  AAPS J       Date:  2013-10       Impact factor: 4.009

Review 3.  The EcoCyc Database.

Authors:  Peter D Karp; Wai Kit Ong; Suzanne Paley; Richard Billington; Ron Caspi; Carol Fulcher; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Peter E Midford; Pallavi Subhraveti; Socorro Gama-Castro; Luis Muñiz-Rascado; César Bonavides-Martinez; Alberto Santos-Zavaleta; Amanda Mackie; Julio Collado-Vides; Ingrid M Keseler; Ian Paulsen
Journal:  EcoSal Plus       Date:  2018-11

Review 4.  Bioinformatic analyses of transmembrane transport: novel software for deducing protein phylogeny, topology, and evolution.

Authors:  Ming Ren Yen; Jeehye Choi; Milton H Saier
Journal:  J Mol Microbiol Biotechnol       Date:  2009-09-18

5.  Preparation of sticky Escherichia coli through surface display of an adhesive catecholamine moiety.

Authors:  Joseph P Park; Min-Jung Choi; Se Hun Kim; Seung Hwan Lee; Haeshin Lee
Journal:  Appl Environ Microbiol       Date:  2013-10-11       Impact factor: 4.792

6.  Integrating membrane transport with male gametophyte development and function through transcriptomics.

Authors:  Kevin W Bock; David Honys; John M Ward; Senthilkumar Padmanaban; Eric P Nawrocki; Kendal D Hirschi; David Twell; Heven Sze
Journal:  Plant Physiol       Date:  2006-04       Impact factor: 8.340

7.  The riboflavin transporter RibU in Lactococcus lactis: molecular characterization of gene expression and the transport mechanism.

Authors:  Catherine M Burgess; Dirk Jan Slotboom; Eric R Geertsma; Ria H Duurkens; Bert Poolman; Douwe van Sinderen
Journal:  J Bacteriol       Date:  2006-04       Impact factor: 3.490

8.  Identification of a gene encoding a transporter essential for utilization of C4 dicarboxylates in Corynebacterium glutamicum.

Authors:  Haruhiko Teramoto; Tomokazu Shirai; Masayuki Inui; Hideaki Yukawa
Journal:  Appl Environ Microbiol       Date:  2008-06-27       Impact factor: 4.792

9.  The mechanism of the tyrosine transporter TyrP supports a proton motive tyrosine decarboxylation pathway in Lactobacillus brevis.

Authors:  Wout A M Wolken; Patrick M Lucas; Aline Lonvaud-Funel; Juke S Lolkema
Journal:  J Bacteriol       Date:  2006-03       Impact factor: 3.490

10.  The Transporter Classification Database: recent advances.

Authors:  Milton H Saier; Ming Ren Yen; Keith Noto; Dorjee G Tamang; Charles Elkan
Journal:  Nucleic Acids Res       Date:  2008-11-20       Impact factor: 16.971
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