Literature DB >> 15245332

Basic residues play key roles in catalysis and NADP(+)-specificity in maize (Zea mays L.) photosynthetic NADP(+)-dependent malic enzyme.

Enrique Detarsio1, Carlos S Andreo, María F Drincovich.   

Abstract

C(4)-specific (photosynthetic) NADP(+)-dependent malic enzyme (NADP(+)-ME) has evolved from C(3)-malic enzymes and represents a unique and specialized form, as indicated by its particular kinetic and regulatory properties. In the present paper, we have characterized maize (Zea mays L.) photosynthetic NADP(+)-ME mutants in which conserved basic residues (lysine and arginine) were changed by site-directed mutagenesis. Kinetic characterization and oxaloacetate partition ratio of the NADP(+)-ME K255I (Lys-255-->Ile) mutant suggest that the mutated lysine residue is implicated in catalysis and substrate binding. Moreover, this residue could be acting as a base, accepting a proton in the malate oxidation step. At the same time, further characterization of the NADP(+)-ME R237L mutant indicates that Arg-237 is also a candidate for such role. These results suggest that both residues may play 'back-up' roles as proton acceptors. On the other hand, Lys-435 and/or Lys-436 are implicated in the coenzyme specificity (NADP(+) versus NAD(+)) of maize NADP(+)-ME by interacting with the 2'-phosphate group of the ribose ring. This is indicated by both the catalytic efficiency with NADP(+) or NAD(+), as well as by the reciprocal inhibition constants of the competitive inhibitors 2'-AMP and 5'-AMP, obtained when comparing the double mutant K435/6L (Lys-435/436-->Ile) with wild-type NADP(+)-ME. The results obtained in the present work indicate that the role of basic residues in maize photosynthetic NADP(+)-ME differs significantly with respect to its role in non-plant MEs, for which crystal structures have been resolved. Such differences are discussed on the basis of a predicted three-dimensional model of the enzyme.

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Year:  2004        PMID: 15245332      PMCID: PMC1133980          DOI: 10.1042/BJ20040594

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  22 in total

1.  Structure of a closed form of human malic enzyme and implications for catalytic mechanism.

Authors:  Z Yang; D L Floyd; G Loeber; L Tong
Journal:  Nat Struct Biol       Date:  2000-03

2.  Determination of the mechanism of human malic enzyme with natural and alternate dinucleotides by isotope effects.

Authors:  M A Rishavy; Z Yang; L Tong; W W Cleland
Journal:  Arch Biochem Biophys       Date:  2001-12-01       Impact factor: 4.013

3.  NADP-malic enzyme from the C4 plant Flaveria bidentis: nucleotide substrate specificity.

Authors:  A R Ashton
Journal:  Arch Biochem Biophys       Date:  1997-09-15       Impact factor: 4.013

4.  Analogues of NADP(+) as inhibitors and coenzymes for NADP(+) malic enzyme from maize leaves.

Authors:  C P Spampinato; P Paneth; M H O'Leary; C S Andreo
Journal:  Photosynth Res       Date:  1991-05       Impact factor: 3.573

5.  Crystal structure of the malic enzyme from Ascaris suum complexed with nicotinamide adenine dinucleotide at 2.3 A resolution.

Authors:  David E Coleman; G S Jagannatha Rao; E J Goldsmith; Paul F Cook; Ben G Harris
Journal:  Biochemistry       Date:  2002-06-04       Impact factor: 3.162

6.  Purification of NAD malic enzyme from potato and investigation of some physical and kinetic properties.

Authors:  S D Grover; P F Canellas; R T Wedding
Journal:  Arch Biochem Biophys       Date:  1981-07       Impact factor: 4.013

7.  Crystal structure of human mitochondrial NAD(P)(+)-dependent malic enzyme: a new class of oxidative decarboxylases.

Authors: 
Journal:  Structure       Date:  1999       Impact factor: 5.006

Review 8.  NADP-malic enzyme from plants: a ubiquitous enzyme involved in different metabolic pathways.

Authors:  M F Drincovich; P Casati; C S Andreo
Journal:  FEBS Lett       Date:  2001-02-09       Impact factor: 4.124

9.  Molecular mechanism for the regulation of human mitochondrial NAD(P)+-dependent malic enzyme by ATP and fumarate.

Authors:  Zhiru Yang; Charles W Lanks; Liang Tong
Journal:  Structure       Date:  2002-07       Impact factor: 5.006

10.  Crystal structures of substrate complexes of malic enzyme and insights into the catalytic mechanism.

Authors:  Xiao Tao; Zhiru Yang; Liang Tong
Journal:  Structure       Date:  2003-09       Impact factor: 5.006

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  4 in total

1.  Biochemical properties and physiological roles of NADP-dependent malic enzyme in Escherichia coli.

Authors:  Baojuan Wang; Peng Wang; Enxia Zheng; Xiangxian Chen; Hanjun Zhao; Ping Song; Ruirui Su; Xiaoning Li; Guoping Zhu
Journal:  J Microbiol       Date:  2011-11-09       Impact factor: 3.422

Review 2.  Biochemical approaches to C4 photosynthesis evolution studies: the case of malic enzymes decarboxylases.

Authors:  Mariana Saigo; Marcos A Tronconi; Mariel C Gerrard Wheeler; Clarisa E Alvarez; María F Drincovich; Carlos S Andreo
Journal:  Photosynth Res       Date:  2013-07-07       Impact factor: 3.573

3.  Three different and tissue-specific NAD-malic enzymes generated by alternative subunit association in Arabidopsis thaliana.

Authors:  Marcos A Tronconi; Verónica G Maurino; Carlos S Andreo; María F Drincovich
Journal:  J Biol Chem       Date:  2010-02-04       Impact factor: 5.157

4.  Magnaporthe oryzae Effector AVR-Pii Helps to Establish Compatibility by Inhibition of the Rice NADP-Malic Enzyme Resulting in Disruption of Oxidative Burst and Host Innate Immunity.

Authors:  Raksha Singh; Sarmina Dangol; Yafei Chen; Jihyun Choi; Yoon-Seong Cho; Jea-Eun Lee; Mi-Ok Choi; Nam-Soo Jwa
Journal:  Mol Cells       Date:  2016-05-03       Impact factor: 5.034

  4 in total

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