Literature DB >> 15242587

Structurally analogous proteins do exist!

S Sri Krishna, Nick V Grishin.   

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Year:  2004        PMID： 15242587     DOI： 10.1016/j.str.2004.06.004

Source DB:  PubMed          Journal:  Structure        ISSN： 0969-2126            Impact factor:   5.006


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  23 in total

1.  Divergent evolution within protein superfolds inferred from profile-based phylogenetics.

Authors:  Douglas L Theobald; Deborah S Wuttke
Journal:  J Mol Biol       Date:  2005-09-20       Impact factor: 5.469

2.  Correlation between evolutionary structural development and protein folding.

Authors:  Chioko Nagao; Tomoki P Terada; Tetsuya Yomo; Masaki Sasai
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-19       Impact factor: 11.205

3.  Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable data sets.

Authors:  Hua Cheng; Bong-Hyun Kim; Nick V Grishin
Journal:  J Mol Biol       Date:  2008-01-05       Impact factor: 5.469

4.  Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments.

Authors:  Lei Xie; Philip E Bourne
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-02       Impact factor: 11.205

5.  The phylogenomic roots of modern biochemistry: origins of proteins, cofactors and protein biosynthesis.

Authors:  Gustavo Caetano-Anollés; Kyung Mo Kim; Derek Caetano-Anollés
Journal:  J Mol Evol       Date:  2012-01-01       Impact factor: 2.395

6.  DOM-fold: a structure with crossing loops found in DmpA, ornithine acetyltransferase, and molybdenum cofactor-binding domain.

Authors:  Hua Cheng; Nick V Grishin
Journal:  Protein Sci       Date:  2005-06-03       Impact factor: 6.725

7.  Manual classification strategies in the ECOD database.

Authors:  Hua Cheng; Yuxing Liao; R Dustin Schaeffer; Nick V Grishin
Journal:  Proteins       Date:  2015-05-08

8.  Exploration of uncharted regions of the protein universe.

Authors:  Lukasz Jaroszewski; Zhanwen Li; S Sri Krishna; Constantina Bakolitsa; John Wooley; Ashley M Deacon; Ian A Wilson; Adam Godzik
Journal:  PLoS Biol       Date:  2009-09-29       Impact factor: 8.029

9.  HorA web server to infer homology between proteins using sequence and structural similarity.

Authors:  Bong-Hyun Kim; Hua Cheng; Nick V Grishin
Journal:  Nucleic Acids Res       Date:  2009-05-05       Impact factor: 16.971

10.  HHomp--prediction and classification of outer membrane proteins.

Authors:  Michael Remmert; Dirk Linke; Andrei N Lupas; Johannes Söding
Journal:  Nucleic Acids Res       Date:  2009-05-08       Impact factor: 16.971
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