Literature DB >> 15240284

A single species, Micromonas pusilla (Prasinophyceae), dominates the eukaryotic picoplankton in the Western English Channel.

Fabrice Not1, Mikel Latasa, Dominique Marie, Thierry Cariou, Daniel Vaulot, Nathalie Simon.   

Abstract

The class Prasinophyceae (Chlorophyta) contains several photosynthetic picoeukaryotic species described from cultured isolates. The ecology of these organisms and their contributions to the picoeukaryotic community in aquatic ecosystems have received little consideration. We have designed and tested eight new 18S ribosomal DNA oligonucleotide probes specific for different Prasinophyceae clades, genera, and species. Using fluorescent in situ hybridization associated with tyramide signal amplification, these probes, along with more general probes, have been applied to samples from a marine coastal site off Roscoff (France) collected every 2 weeks between July 2000 and September 2001. The abundance of eukaryotic picoplankton remained high (>10(3) cells ml(-1)) during the sampling period, with maxima in summer (up to 2 x 10(4) cells ml(-1)), and a single green algal species, Micromonas pusilla (Prasinophyceae), dominated the community all year round. Members of the order Prasinococcales and the species Bathycoccus prasinos (Mamiellales) displayed sporadic occurrences, while the abundances of all other Prasinophyceae groups targeted remained negligible.

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Year:  2004        PMID: 15240284      PMCID: PMC444783          DOI: 10.1128/AEM.70.7.4064-4072.2004

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  10 in total

1.  Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity.

Authors:  S Y Moon-van der Staay; R De Wachter; D Vaulot
Journal:  Nature       Date:  2001-02-01       Impact factor: 49.962

Review 2.  Prochlorococcus, a marine photosynthetic prokaryote of global significance.

Authors:  F Partensky; W R Hess; D Vaulot
Journal:  Microbiol Mol Biol Rev       Date:  1999-03       Impact factor: 11.056

3.  Oligonucleotide probes for the identification of three algal groups by dot blot and fluorescent whole-cell hybridization.

Authors:  N Simon; L Campbell; E Ornolfsdottir; R Groben; L Guillou; M Lange; L K Medlin
Journal:  J Eukaryot Microbiol       Date:  2000 Jan-Feb       Impact factor: 3.346

4.  Are autotrophs less diverse than heterotrophs in marine picoplankton?

Authors:  Daniel Vaulot; Khadidja Romari; Fabrice Not
Journal:  Trends Microbiol       Date:  2002-06       Impact factor: 17.079

5.  Quantitative assessment of picoeukaryotes in the natural environment by using taxon-specific oligonucleotide probes in association with tyramide signal amplification-fluorescence in situ hybridization and flow cytometry.

Authors:  Isabelle C Biegala; Fabrice Not; Daniel Vaulot; Nathalie Simon
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792

6.  ARB: a software environment for sequence data.

Authors:  Wolfgang Ludwig; Oliver Strunk; Ralf Westram; Lothar Richter; Harald Meier; Arno Buchner; Tina Lai; Susanne Steppi; Gangolf Jobb; Wolfram Förster; Igor Brettske; Stefan Gerber; Anton W Ginhart; Oliver Gross; Silke Grumann; Stefan Hermann; Ralf Jost; Andreas König; Thomas Liss; Ralph Lüssmann; Michael May; Björn Nonhoff; Boris Reichel; Robert Strehlow; Alexandros Stamatakis; Norbert Stuckmann; Alexander Vilbig; Michael Lenke; Thomas Ludwig; Arndt Bode; Karl-Heinz Schleifer
Journal:  Nucleic Acids Res       Date:  2004-02-25       Impact factor: 16.971

7.  Ribosomal RNA-based oligonucleotide probes to identify marine green ultraphytoplankton.

Authors:  D C Knauber; E S Berry; M W Fawley
Journal:  J Eukaryot Microbiol       Date:  1996 Mar-Apr       Impact factor: 3.346

8.  Diversity of picoplanktonic prasinophytes assessed by direct nuclear SSU rDNA sequencing of environmental samples and novel isolates retrieved from oceanic and coastal marine ecosystems.

Authors:  Laure Guillou; Wenche Eikrem; Marie-Josèphe Chrétiennot-Dinet; Florence Le Gall; Ramon Massana; Khadidja Romari; Carlos Pedrós-Alió; Daniel Vaulot
Journal:  Protist       Date:  2004-06

9.  A comparison of non-radioisotopic hybridization assay methods using fluorescent, chemiluminescent and enzyme labeled synthetic oligodeoxyribonucleotide probes.

Authors:  M S Urdea; B D Warner; J A Running; M Stempien; J Clyne; T Horn
Journal:  Nucleic Acids Res       Date:  1988-06-10       Impact factor: 16.971

10.  The Basal Position of Scaly Green Flagellates among the Green Algae (Chlorophyta) is Revealed by Analyses of Nuclear-Encoded SSU rRNA Sequences.

Authors:  T Nakayama; B Marin; H D Kranz; B Surek; V A Huss; I Inouye; M Melkonian
Journal:  Protist       Date:  2009-07-13
  10 in total
  50 in total

1.  Seasonal patterns in Arctic prasinophytes and inferred ecology of Bathycoccus unveiled in an Arctic winter metagenome.

Authors:  Nathalie Joli; Adam Monier; Ramiro Logares; Connie Lovejoy
Journal:  ISME J       Date:  2017-03-07       Impact factor: 10.302

2.  Composition of the summer photosynthetic pico and nanoplankton communities in the Beaufort Sea assessed by T-RFLP and sequences of the 18S rRNA gene from flow cytometry sorted samples.

Authors:  Sergio Balzano; Dominique Marie; Priscillia Gourvil; Daniel Vaulot
Journal:  ISME J       Date:  2012-01-26       Impact factor: 10.302

3.  Temperature is a key factor in Micromonas-virus interactions.

Authors:  David Demory; Laure Arsenieff; Nathalie Simon; Christophe Six; Fabienne Rigaut-Jalabert; Dominique Marie; Pei Ge; Estelle Bigeard; Stéphan Jacquet; Antoine Sciandra; Olivier Bernard; Sophie Rabouille; Anne-Claire Baudoux
Journal:  ISME J       Date:  2017-01-13       Impact factor: 10.302

4.  Picoeukaryotic plankton diversity at the Helgoland time series site as assessed by three molecular methods.

Authors:  L K Medlin; K Metfies; H Mehl; Karen Wiltshire; K Valentin
Journal:  Microb Ecol       Date:  2006-05-19       Impact factor: 4.552

5.  Prasinoviruses of the marine green alga Ostreococcus tauri are mainly species specific.

Authors:  Camille Clerissi; Yves Desdevises; Nigel Grimsley
Journal:  J Virol       Date:  2012-02-08       Impact factor: 5.103

6.  Feasibility of transferring fluorescent in situ hybridization probes to an 18S rRNA gene phylochip and mapping of signal intensities.

Authors:  Katja Metfies; Linda K Medlin
Journal:  Appl Environ Microbiol       Date:  2008-03-07       Impact factor: 4.792

7.  Feasibility of assessing the community composition of prasinophytes at the Helgoland Roads sampling site with a DNA microarray.

Authors:  Christine Gescher; Katja Metfies; Stephan Frickenhaus; Britta Knefelkamp; Karen H Wiltshire; Linda K Medlin
Journal:  Appl Environ Microbiol       Date:  2008-07-11       Impact factor: 4.792

8.  Mixotrophic haptophytes are key bacterial grazers in oligotrophic coastal waters.

Authors:  Fernando Unrein; Josep M Gasol; Fabrice Not; Irene Forn; Ramon Massana
Journal:  ISME J       Date:  2013-08-08       Impact factor: 10.302

9.  A comparative study of iron uptake mechanisms in marine microalgae: iron binding at the cell surface is a critical step.

Authors:  Robert Sutak; Hugo Botebol; Pierre-Louis Blaiseau; Thibaut Léger; François-Yves Bouget; Jean-Michel Camadro; Emmanuel Lesuisse
Journal:  Plant Physiol       Date:  2012-10-02       Impact factor: 8.340

10.  Phagotrophy by the picoeukaryotic green alga Micromonas: implications for Arctic Oceans.

Authors:  Zaid M McKie-Krisberg; Robert W Sanders
Journal:  ISME J       Date:  2014-02-20       Impact factor: 10.302

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