Literature DB >> 15239050

Surface plasmon resonance evaluation of various aminoglycoside-RNA hairpin interactions reveals low degree of selectivity.

Steven H L Verhelst1, Paul J A Michiels, Gijsbert A van der Marel, Constant A A van Boeckel, Jacques H van Boom.   

Abstract

Aminoglycoside antibiotics, which are able to selectively bind to RNA, are considered to be an important lead in RNA-targeting drug discovery. In this study, surface plasmon resonance (SPR) was employed to explore the interaction of aminoglycosides with known tobramycin-binding RNA hairpins (aptamers) and an unrelated RNA hairpin. It was established that aminoglycosides have multiple interactions with RNA hairpins. Unexpectedly, the different hairpins showed comparable affinity for a set of related aminoglycosides. The observed absence of selectivity presents an extra hurdle in the discovery of novel aminoglycosides as specific drugs that target defined RNA hairpins.

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Year:  2004        PMID: 15239050     DOI: 10.1002/cbic.200300819

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  8 in total

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6.  Two-dimensional combinatorial screening and the RNA Privileged Space Predictor program efficiently identify aminoglycoside-RNA hairpin loop interactions.

Authors:  Dustin J Paul; Steven J Seedhouse; Matthew D Disney
Journal:  Nucleic Acids Res       Date:  2009-09-02       Impact factor: 16.971

7.  Scanning conformational space with a library of stereo- and regiochemically diverse aminoglycoside derivatives: the discovery of new ligands for RNA hairpin sequences.

Authors:  Alan Ironmonger; Benjamin Whittaker; Andrew J Baron; Blandine Clique; Chris J Adams; Alison E Ashcroft; Peter G Stockley; Adam Nelson
Journal:  Org Biomol Chem       Date:  2007-02-27       Impact factor: 3.876

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Authors:  Megan L Kelly; Chia-Chieh Chu; Honglue Shi; Laura R Ganser; Hal P Bogerd; Kelly Huynh; Yuze Hou; Bryan R Cullen; Hashim M Al-Hashimi
Journal:  RNA       Date:  2020-10-07       Impact factor: 5.636

  8 in total

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