Literature DB >> 15238506

Enhancing linkage analysis of complex disorders: an evaluation of high-density genotyping.

Stephen J Sawcer1, Mel Maranian, Sara Singlehurst, TaiWai Yeo, Alastair Compston, Mark J Daly, Philip L De Jager, Stacey Gabriel, David A Hafler, Adrian J Ivinson, Eric S Lander, John D Rioux, Emily Walsh, Simon G Gregory, Silke Schmidt, Margaret A Pericak-Vance, Lisa Barcellos, Stephen L Hauser, Jorge R Oksenberg, Shannon J Kenealy, Jonathan L Haines.   

Abstract

To explore the potential value of recently developed high-density linkage mapping methods in the analysis of complex disease we have regenotyped five nuclear families first studied in the 1996 UK multiple sclerosis linkage genome screen, using Applied Biosystems high-density microsatellite linkage mapping set, the Illumina BeadArray linkage mapping panel (version 3) and the Affymetrix GeneChip Human Mapping 10K array. We found that genotyping success, information extraction and genotyping accuracy were improved with all systems. These improvements were particularly marked with the SNP-based methods (Illumina and Affymetrix), with little difference between these. The extent of additional information extracted is considerable, indicating that reanalysis of existing multiplex families using these newer systems would substantially increase power. Copyright 2004 Oxford University Press

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Year:  2004        PMID: 15238506     DOI: 10.1093/hmg/ddh202

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  20 in total

1.  Genes and autoimmune diseases - a complex inheritance.

Authors:  Sara M Mariani
Journal:  MedGenMed       Date:  2004-12-08

2.  A high-density screen for linkage in multiple sclerosis.

Authors:  Stephen Sawcer; Maria Ban; Mel Maranian; Tai Wai Yeo; Alastair Compston; Andrew Kirby; Mark J Daly; Philip L De Jager; Emily Walsh; Eric S Lander; John D Rioux; David A Hafler; Adrian Ivinson; Jacqueline Rimmler; Simon G Gregory; Silke Schmidt; Margaret A Pericak-Vance; Eva Akesson; Jan Hillert; Pameli Datta; Annette Oturai; Lars P Ryder; Hanne F Harbo; Anne Spurkland; Kjell-Morten Myhr; Mikko Laaksonen; David Booth; Robert Heard; Graeme Stewart; Robin Lincoln; Lisa F Barcellos; Stephen L Hauser; Jorge R Oksenberg; Shannon J Kenealy; Jonathan L Haines
Journal:  Am J Hum Genet       Date:  2005-07-29       Impact factor: 11.025

3.  Genomewide linkage scan for opioid dependence and related traits.

Authors:  Joel Gelernter; Carolien Panhuysen; Marsha Wilcox; Victor Hesselbrock; Bruce Rounsaville; James Poling; Roger Weiss; Susan Sonne; Hongyu Zhao; Lindsay Farrer; Henry R Kranzler
Journal:  Am J Hum Genet       Date:  2006-03-16       Impact factor: 11.025

4.  The value of molecular haplotypes in a family-based linkage study.

Authors:  E M Gillanders; J V Pearson; A J M Sorant; J M Trent; J R O'Connell; J E Bailey-Wilson
Journal:  Am J Hum Genet       Date:  2006-06-28       Impact factor: 11.025

5.  Genome-wide linkage scan for contraction velocity characteristics of knee musculature in the Leuven Genes for Muscular Strength Study.

Authors:  Gunther De Mars; An Windelinckx; Wim Huygens; Maarten W Peeters; Gaston P Beunen; Jeroen Aerssens; Robert Vlietinck; Martine A I Thomis
Journal:  Physiol Genomics       Date:  2008-08-05       Impact factor: 3.107

6.  The genetic aspects of multiple sclerosis.

Authors:  Stephen Sawcer
Journal:  Ann Indian Acad Neurol       Date:  2009-10       Impact factor: 1.383

7.  Beyond proof of principle: new genes for Alzheimer's disease through collaboration.

Authors:  Margaret A Pericak-Vance; Jonathan L Haines
Journal:  Lancet Neurol       Date:  2009-11       Impact factor: 44.182

8.  Efficient identification of novel mutations in patients with limb girdle muscular dystrophy.

Authors:  Steven E Boyden; Mustafa A Salih; Anna R Duncan; Alexander J White; Elicia A Estrella; Stephanie L Burgess; Mohammed Z Seidahmed; Abdullah S Al-Jarallah; Hisham M S Alkhalidi; Waleed M Al-Maneea; Richard R Bennett; Salem H Alshemmari; Louis M Kunkel; Peter B Kang
Journal:  Neurogenetics       Date:  2010-07-13       Impact factor: 2.660

9.  High-density genomewide linkage analysis of exceptional human longevity identifies multiple novel loci.

Authors:  Steven E Boyden; Louis M Kunkel
Journal:  PLoS One       Date:  2010-08-31       Impact factor: 3.240

10.  Genome-wide linkage screen for stature and body mass index in 3.032 families: evidence for sex- and population-specific genetic effects.

Authors:  Sampo Sammalisto; Tero Hiekkalinna; Karen Schwander; Sharon Kardia; Alan B Weder; Beatriz L Rodriguez; Alessandro Doria; Jennifer A Kelly; Gail R Bruner; John B Harley; Susan Redline; Emma K Larkin; Sanjay R Patel; Amy J H Ewan; James L Weber; Markus Perola; Leena Peltonen
Journal:  Eur J Hum Genet       Date:  2008-09-10       Impact factor: 4.246

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