Literature DB >> 15236576

The active site cysteine of arginine kinase: structural and functional analysis of partially active mutants.

James L Gattis1, Eliza Ruben, Marcia O Fenley, W Ross Ellington, Michael S Chapman.   

Abstract

Arginine kinase buffers cellular ATP levels by catalyzing reversible phosphoryl transfer between ATP and arginine. A conserved cysteine has long been thought important in catalysis. Here, cysteine 271 of horseshoe crab arginine kinase has been mutated to serine, alanine, asparagine, or aspartate. Catalytic turnover rates were 0.02-1.0% of wild type, but the activity of uncharged mutations could be partially rescued with chloride. Steady-state binding constants were slightly increased, more so for phospho-L-arginine than ADP. Substrate binding synergy observed in many phosphagen kinases was reduced or eliminated in mutant enzymes. The crystallographic structure of the alanine mutant at 2.3 A resolution, determined as a transition state analogue complex with arginine, nitrate, and MgADP, was nearly identical to wild type. Enzyme-substrate interactions are maintained as in wild type, and substrates remain at least roughly aligned for in-line phosphoryl transfer. Homology models with serine, asparagine, or aspartate replacing the active site cysteine similarly show only minor structural changes. Most striking, however, is the presence in the C271A mutant crystallographic structure of a chloride ion within 3.5 A of the nonreactive N(eta) substrate nitrogen, approximating the position of the sulfur in the wild-type's cysteine. Together, the results contradict prevailing speculation that the cysteine mediates a substrate-induced conformational change, confirm that it is the thiolate form that is relevant to catalysis, and suggest that one of its roles is to help to enhance the catalytic rate through electrostatic stabilization of the transition state.

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Year:  2004        PMID: 15236576     DOI: 10.1021/bi049793i

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  11 in total

1.  The structure of lombricine kinase: implications for phosphagen kinase conformational changes.

Authors:  D Jeffrey Bush; Olga Kirillova; Shawn A Clark; Omar Davulcu; Felcy Fabiola; Qing Xie; Thayumanasamy Somasundaram; W Ross Ellington; Michael S Chapman
Journal:  J Biol Chem       Date:  2011-01-06       Impact factor: 5.157

2.  Arginine kinase: joint crystallographic and NMR RDC analyses link substrate-associated motions to intrinsic flexibility.

Authors:  Xiaogang Niu; Lei Bruschweiler-Li; Omar Davulcu; Jack J Skalicky; Rafael Brüschweiler; Michael S Chapman
Journal:  J Mol Biol       Date:  2010-11-12       Impact factor: 5.469

3.  Crystal structures of arginine kinase in complex with ADP, nitrate, and various phosphagen analogs.

Authors:  Shawn A Clark; Omar Davulcu; Michael S Chapman
Journal:  Biochem Biophys Res Commun       Date:  2012-09-17       Impact factor: 3.575

4.  Elevated μs-ms timescale backbone dynamics in the transition state analog form of arginine kinase.

Authors:  Omar Davulcu; Yu Peng; Rafael Brüschweiler; Jack J Skalicky; Michael S Chapman
Journal:  J Struct Biol       Date:  2017-05-08       Impact factor: 2.867

5.  Rate-limiting domain and loop motions in arginine kinase.

Authors:  Omar Davulcu; Jack J Skalicky; Michael S Chapman
Journal:  Biochemistry       Date:  2011-04-22       Impact factor: 3.162

6.  A tyrosine kinase and its activator control the activity of the CtsR heat shock repressor in B. subtilis.

Authors:  Janine Kirstein; Daniela Zühlke; Ulf Gerth; Kürşad Turgay; Michael Hecker
Journal:  EMBO J       Date:  2005-09-15       Impact factor: 11.598

7.  Interaction of the Small GTPase Cdc42 with Arginine Kinase Restricts White Spot Syndrome Virus in Shrimp.

Authors:  Ji-Dong Xu; Hai-Shan Jiang; Tian-Di Wei; Ke-Yi Zhang; Xian-Wei Wang; Xiao-Fan Zhao; Jin-Xing Wang
Journal:  J Virol       Date:  2017-02-14       Impact factor: 5.103

8.  Intrinsic domain and loop dynamics commensurate with catalytic turnover in an induced-fit enzyme.

Authors:  Omar Davulcu; Peter F Flynn; Michael S Chapman; Jack J Skalicky
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

9.  Structure of McsB, a protein kinase for regulated arginine phosphorylation.

Authors:  Marcin J Suskiewicz; Bence Hajdusits; Rebecca Beveridge; Alexander Heuck; Lam Dai Vu; Robert Kurzbauer; Katja Hauer; Vanessa Thoeny; Klaus Rumpel; Karl Mechtler; Anton Meinhart; Tim Clausen
Journal:  Nat Chem Biol       Date:  2019-04-08       Impact factor: 15.040

10.  Common hydrogen bond interactions in diverse phosphoryl transfer active sites.

Authors:  Jean C Summerton; Gregory M Martin; Jeffrey D Evanseck; Michael S Chapman
Journal:  PLoS One       Date:  2014-09-19       Impact factor: 3.240

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