| Literature DB >> 15222895 |
Namrata S Patil1, David L Wong, Katherine D Collier, Hugh C McDonald.
Abstract
BACKGROUND: We have devised a simple and efficient fluorescence-based method to track antigen uptake and processing in human B lymphoblastoid cells (B-LCL). Fluorescein labelled subtilisin was used to optimize antigen uptake conditions and identify processed peptides from human cell lines.Entities:
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Year: 2004 PMID: 15222895 PMCID: PMC459215 DOI: 10.1186/1471-2172-5-12
Source DB: PubMed Journal: BMC Immunol ISSN: 1471-2172 Impact factor: 3.615
Figure 1LC/MS Analysis of FITC-Subtilisin. The de-convoluted mass spectrum shows the un-labeled subtilisin (27,476 Da), subtilisin conjugated to one (27,865 Da) or two (28,255 Da) FITC molecules.
Figure 2LC/MS/MS analysis of tryptic digested FITC-Subtilisin. Top panel: Full base peak MS spectrum and base peak search spectrum for FITC molecule at m/z = 390.0 Da. Middle panel: A FITC-subtilisin peptide (137–145, 1221.2 Da) was identified at RT = 23.88 min. Bottom panel: Subsequent MS/MS fragmentation on the same peptide molecule confirmed its sequence.
Binding of FITC-Subtilisin to Immuno-adsorbantsa
| Initial RFU | 244 | 244 | 244 |
| Bound | 113 | 80 | 6 |
| Eluted | 14.6 | 5.6 | 1.4 |
a12 μg of FITC-subtilisin (20.3 RFU/ug protein) were mixed with 0.1 ml of each immunoadsorbent in triplicate, in a total volume of 1 ml of Dulbecco's PBS containing 0.05% BSA and 2 mM PMSF, overnight at 4°C for 18 hr.
In Vitro hydrolysis of FITC-Subtilisin to < 10 K by Preiss Cell Extractsa
| Cell Extract | + | - | + | - |
| Initial RFU | 100 | 100 | 100 | 100 |
| < 10 K Fraction | 44 | 0.46 | 27 | 19 |
aPreiss cell extracts (50 μl) were adjusted to pH 5.2 with 0.1 M sodium acetate or to pH 7.7 with 0.1 M sodium bicarbonate in a total volume of 1 ml and incubated with 15 μg of PMSF inactivated FITC-subtilisin (22 RFU/μg protein) at 37°C for 4 hr. The contents of each tube were centrifuged on a Centriprep YM-10 concentrator and the percentage of fluorescent activity recovered in the low molecular weight fraction calculated.
Tracking FITC-Subtilisin in an antigen uptake experiment with acid extractiona
| Conjugate added | 140,000 | 15555 | 100% |
| Washed cells | 750 | 83 | 0.53 |
| Cell extract | 261 | 29 | 0.18 |
| < 10 K fraction | 26 | 2.9 | 0.018 |
a5 × 108 8.1.6 cells were resuspended in 300 ml of complete media, mixed with 15.5 mg of fluorescein-subtilisin and incubated for at 37°C for 24 hr in a roller bottle.
Summary of Treatments to Increase Exogenous Uptake of FITC-Subtilisin
| 1. | Active Subtilisin | Cell Lysis |
| 2. | TCA-precipitated FITC-subtilisin | Uptake, no increase in processing |
| 3. | Autolysed FITC-subtilisin | Uptake, no increase in processing |
| 4. | FITC-subtilisin antibody conjugate | Uptake, no increase in processing |
| 5. | FITC-subtilisin crosslinked with glutaraldehyde | Uptake, no increase in processing |
| 6. | Carriers (BioPorter, Chariot, TAT peptide) + FITC-subtilisin | Uptake, no increase in processing |
| 7. | Liposomes + FITC-subtilisin | Uptake, no increase in processing |
| 8. | Alpha-2-macroglobulin + FITC-subtilisin | No increase |
| 9. | IFN gamma + FITC-subtilisin | 10–25% increase in processing |
| 10. | Pulse 2 hr, 12 hr, 24 hr, 36 hr, 48 hr | 24 hr best |
| 11. | Antigen dose 100–900 μg/mL | 100–200 μg/mL best |
Tracking FITC-Subtilisin in a large scale antigen uptake experiment with immuno-affinity purificationa
| Pulsed Cells | 133800 | 223000 | 100% |
| Washed Cells | 1358 | 22630 | 1 |
| Cell lysate | 558 | 930 | 0.4 |
| Immunoaffinity column flow-through | 343 | 571 | 0.20 |
| < 10 K flow-through fraction | 79.2 | 132 | 0.06 |
| DR-eluted peptides | 31 | 51 | 0.02 |
a8.5 × 109 8.1.6 cells were mixed with 223 mg of conjugate (0.6 RFU/ug) in 1600 ml of complete media and incubated at 37°C for 22 hr.
Subtilisin Peptides Identified from Subtilisin Antigen Uptake in Human Cells
| 8.1.6 | DR3 | Cell extract | 114–126 | AIANNMDVINMSL | 1405.7 | 1406.1 | 10/24 |
| Preiss | DR4 | Cell extract | 108–122 | INGIEWAIANNMDVI | 1672.8 | 1671.6 | 9/28 |
| 8.1.6 | DR3 | Cell extract | 43–53 | KVAGGASMVPS | 1003.5 | 1004.3 | 10/20 |
| KG-1 | DR11, DR14 | DR-bound | 70–84 * | GTVAALNNSIGVLGV | 1384.6 | 1384.78 | 12/28 |
* Identified by Q-TOF analysis. The others were identified by LC-MS analysis.