Literature DB >> 15221759

The International Protein Index: an integrated database for proteomics experiments.

Paul J Kersey1, Jorge Duarte, Allyson Williams, Youla Karavidopoulou, Ewan Birney, Rolf Apweiler.   

Abstract

Despite the complete determination of the genome sequence of several higher eukaryotes, their proteomes remain relatively poorly defined. Information about proteins identified by different experimental and computational methods is stored in different databases, meaning that no single resource offers full coverage of known and predicted proteins. IPI (the International Protein Index) has been developed to address these issues and offers complete nonredundant data sets representing the human, mouse and rat proteomes, built from the Swiss-Prot, TrEMBL, Ensembl and RefSeq databases.

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Year:  2004        PMID： 15221759     DOI： 10.1002/pmic.200300721

Source DB:  PubMed          Journal:  Proteomics        ISSN： 1615-9853            Impact factor:   3.984


  324 in total

1.  Computational analysis of unassigned high-quality MS/MS spectra in proteomic data sets.

Authors:  Kang Ning; Damian Fermin; Alexey I Nesvizhskii
Journal:  Proteomics       Date:  2010-07       Impact factor: 3.984

2.  A systematic study of site-specific GalNAc-type O-glycosylation modulating proprotein convertase processing.

Authors:  Katrine Ter-Borch Gram Schjoldager; Malene B Vester-Christensen; Christoffer K Goth; Thomas Nordahl Petersen; Søren Brunak; Eric P Bennett; Steven B Levery; Henrik Clausen
Journal:  J Biol Chem       Date:  2011-09-20       Impact factor: 5.157

3.  Naturally occurring variant of mouse apolipoprotein A-I alters the lipid and HDL association properties of the protein.

Authors:  Timothy J Sontag; Ronald Carnemolla; Tomas Vaisar; Catherine A Reardon; Godfrey S Getz
Journal:  J Lipid Res       Date:  2012-03-08       Impact factor: 5.922

4.  Staged-probability strategy of processing shotgun proteomic data to discover more functionally important proteins.

Authors:  Hong Xu; Guijun Ma; Qingqiao Tan; Qiang Zhou; Wen Su; Rongxiu Li
Journal:  Protein Cell       Date:  2012-01-09       Impact factor: 14.870

5.  PTMScout, a Web resource for analysis of high throughput post-translational proteomics studies.

Authors:  Kristen M Naegle; Melissa Gymrek; Brian A Joughin; Joel P Wagner; Roy E Welsch; Michael B Yaffe; Douglas A Lauffenburger; Forest M White
Journal:  Mol Cell Proteomics       Date:  2010-07-14       Impact factor: 5.911

6.  A novel, in-solution separation of endogenous cardiac sarcomeric proteins and identification of distinct charged variants of regulatory light chain.

Authors:  Sarah B Scruggs; Rick Reisdorph; Mike L Armstrong; Chad M Warren; Nichole Reisdorph; R John Solaro; Peter M Buttrick
Journal:  Mol Cell Proteomics       Date:  2010-05-05       Impact factor: 5.911

7.  Shotgun proteomics implicates extracellular matrix proteins and protease systems in neuronal development induced by astrocyte cholinergic stimulation.

Authors:  Nadia H Moore; Lucio G Costa; Scott A Shaffer; David R Goodlett; Marina Guizzetti
Journal:  J Neurochem       Date:  2008-12-10       Impact factor: 5.372

8.  MassMatrix: a database search program for rapid characterization of proteins and peptides from tandem mass spectrometry data.

Authors:  Hua Xu; Michael A Freitas
Journal:  Proteomics       Date:  2009-03       Impact factor: 3.984

9.  Tiered Human Integrated Sequence Search Databases for Shotgun Proteomics.

Authors:  Eric W Deutsch; Zhi Sun; David S Campbell; Pierre-Alain Binz; Terry Farrah; David Shteynberg; Luis Mendoza; Gilbert S Omenn; Robert L Moritz
Journal:  J Proteome Res       Date:  2016-09-12       Impact factor: 4.466

10.  Distinct signalling properties of insulin receptor substrate (IRS)-1 and IRS-2 in mediating insulin/IGF-1 action.

Authors:  Atefeh Rabiee; Marcus Krüger; Jacob Ardenkjær-Larsen; C Ronald Kahn; Brice Emanuelli
Journal:  Cell Signal       Date:  2018-03-14       Impact factor: 4.315
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