Literature DB >> 15219984

How do aldehyde side products occur during alkene epoxidation by cytochrome P450? Theory reveals a state-specific multi-state scenario where the high-spin component leads to all side products.

Sam P de Visser1, Devesh Kumar, Sason Shaik.   

Abstract

A theoretical study of alkene epoxidation, by the high-valent n class="Chemical">iron-oxo species (Compound I) of cytochrome P450, reveals a multi-state scenario in which the different products are generated in a state specific manner. All the low-spin doublet state processes are effectively concerted epoxide producing pathways. By contrast, all the high-spin quartet processes are stepwise and either lead to epoxide that does not conserve the isomeric identity of the alkene (cis or trans), or/and to by-products such as suicidal complexes and aldehydes. The product/state inventory is the following: (a) The epoxide with conserved alkene stereochemistry is generated from the low-spin doublet states of Compound I in a nonsynchronous but effectively concerted pathways that involve carbon radical (with Fe(III) and Fe(IV)) and cationic intermediates. (b) The epoxide with scrambled alkene stereochemistry is obtained from the quartet high-spin radical intermediate (with Fe(IV)). (c) The suicidal complex, with a C-N bond between the alkene and the porphyrin, is obtained from the high-spin cationic state that possesses one electron in the sigma xy* orbital (the antibonding Fe-N orbital made from dxy and nitrogen sigma-hybrids). (d) The aldehyde by-product is obtained from the high-spin cationic state that possesses one electron in the sigma xy* orbital (the antibonding O-Fe-S orbital made from dz2 and the oxo and sulfur sigma-hybrids). Factors controlling the competition between these processes are discussed.

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Year:  2004        PMID: 15219984     DOI: 10.1016/j.jinorgbio.2004.01.015

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  10 in total

1.  Epoxidation Catalyzed by the Nonheme Iron(II)- and 2-Oxoglutarate-Dependent Oxygenase, AsqJ: Mechanistic Elucidation of Oxygen Atom Transfer by a Ferryl Intermediate.

Authors:  Jikun Li; Hsuan-Jen Liao; Yijie Tang; Jhih-Liang Huang; Lide Cha; Te-Sheng Lin; Justin L Lee; Igor V Kurnikov; Maria G Kurnikova; Wei-Chen Chang; Nei-Li Chan; Yisong Guo
Journal:  J Am Chem Soc       Date:  2020-03-16       Impact factor: 15.419

2.  The intrinsic axial ligand effect on propene oxidation by horseradish peroxidase versus cytochrome P450 enzymes.

Authors:  Devesh Kumar; Sam P de Visser; Pankaz K Sharma; Etienne Derat; Sason Shaik
Journal:  J Biol Inorg Chem       Date:  2005-02-19       Impact factor: 3.358

3.  Ab initio dynamics of the cytochrome P450 hydroxylation reaction.

Authors:  Justin E Elenewski; John C Hackett
Journal:  J Chem Phys       Date:  2015-02-14       Impact factor: 3.488

Review 4.  Oxygen Activation and Radical Transformations in Heme Proteins and Metalloporphyrins.

Authors:  Xiongyi Huang; John T Groves
Journal:  Chem Rev       Date:  2017-12-29       Impact factor: 60.622

5.  Cytochrome P450 initiates degradation of cis-dichloroethene by Polaromonas sp. strain JS666.

Authors:  Shirley F Nishino; Kwanghee A Shin; James M Gossett; Jim C Spain
Journal:  Appl Environ Microbiol       Date:  2013-01-25       Impact factor: 4.792

Review 6.  One oxidant, many pathways: a theoretical perspective of monooxygenation mechanisms by cytochrome P450 enzymes.

Authors:  Sason Shaik; Samuël P de Visser; Devesh Kumar
Journal:  J Biol Inorg Chem       Date:  2004-07-28       Impact factor: 3.358

7.  Importance of H-abstraction in the final step of nitrosoalkane formation in the mechanism-based inactivation of cytochrome P450 by amine-containing drugs.

Authors:  Hajime Hirao; Nandun M Thellamurege; Pratanphorn Chuanprasit; Kai Xu
Journal:  Int J Mol Sci       Date:  2013-12-18       Impact factor: 5.923

8.  Metabolic Activation and Carcinogenesis of Tobacco-Specific Nitrosamine N'-Nitrosonornicotine (NNN): A Density Function Theory and Molecular Docking Study.

Authors:  Tengjiao Fan; Guohui Sun; Lijiao Zhao; Xin Cui; Rugang Zhong
Journal:  Int J Environ Res Public Health       Date:  2019-01-09       Impact factor: 3.390

9.  Enzymatic Control over Reactive Intermediates Enables Direct Oxidation of Alkenes to Carbonyls by a P450 Iron-Oxo Species.

Authors:  Jordi Soler; Sebastian Gergel; Cindy Klaus; Stephan C Hammer; Marc Garcia-Borràs
Journal:  J Am Chem Soc       Date:  2022-08-23       Impact factor: 16.383

Review 10.  Applications of density functional theory to iron-containing molecules of bioinorganic interest.

Authors:  Hajime Hirao; Nandun Thellamurege; Xi Zhang
Journal:  Front Chem       Date:  2014-04-29       Impact factor: 5.221

  10 in total

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