Literature DB >> 15218207

Solving the Sayre equations for centrosymmetric structures with a genetic algorithm.

Yi Zhou1, Wu-Pei Su.   

Abstract

Sayre's equations give a set of relationships that exist among the structure factors of an equal-atom structure. In order to obtain the correct phases of the structure factors, a genetic algorithm is used to minimize a least-squares residual of Sayre's equations. In the genetic algorithm, a phase is treated as a gene and the whole set of phases is considered as a chromosome. Every chromosome is relaxed to a nearby local minimum by quenching after being produced from a previous generation. Trial calculations for a structure containing 92 non-H equal atoms with synthetic data and another structure containing 62 non-H equal atoms with real data are presented. Compared to simulated annealing, a genetic algorithm is a more efficient means of global optimization.

Mesh:

Year:  2004        PMID: 15218207     DOI: 10.1107/S0108767304010001

Source DB:  PubMed          Journal:  Acta Crystallogr A        ISSN: 0108-7673            Impact factor:   2.290


  2 in total

1.  Improving experimental phases for strong reflections prior to density modification.

Authors:  Monarin Uervirojnangkoorn; Rolf Hilgenfeld; Thomas C Terwilliger; Randy J Read
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-09-20

2.  CrowdPhase: crowdsourcing the phase problem.

Authors:  Julien Jorda; Michael R Sawaya; Todd O Yeates
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-05-23
  2 in total

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