Literature DB >> 15215518

Determinants of quaternary association in legume lectins.

K V Brinda1, Nivedita Mitra, Avadhesha Surolia, Saraswathi Vishveshwara.   

Abstract

It is well known that the sequence of amino acids in proteins code for its tertiary structure. It is also known that there exists a relationship between sequence and the quaternary structure of proteins. The question addressed here is whether the nature of quaternary association can be predicted from the sequence, similar to the three-dimensional structure prediction from the sequence. The class of proteins called legume lectins is an interesting model system to investigate this problem, because they have very high sequence and tertiary structure homology, with diverse forms of quaternary association. Hence, we have used legume lectins as a probe in this paper to (1) gain novel insights about the relationship between sequence and quaternary structure; (2) identify the sequence motifs that are characteristic of a given type of quaternary association; and (3) predict the quaternary association from the sequence motif.

Mesh:

Substances:

Year:  2004        PMID: 15215518      PMCID: PMC2279936          DOI: 10.1110/ps.04651004

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  24 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The role of weak protein-protein interactions in multivalent lectin-carbohydrate binding: crystal structure of cross-linked FRIL.

Authors:  T W Hamelryck; J G Moore; M J Chrispeels; R Loris; L Wyns
Journal:  J Mol Biol       Date:  2000-06-16       Impact factor: 5.469

Review 3.  Legume lectin family, the 'natural mutants of the quaternary state', provide insights into the relationship between protein stability and oligomerization.

Authors:  V R Srinivas; G B Reddy; N Ahmad; C P Swaminathan; N Mitra; A Surolia
Journal:  Biochim Biophys Acta       Date:  2001-08-15

4.  Signature of quaternary structure in the sequences of legume lectins.

Authors:  N Manoj; K Suguna
Journal:  Protein Eng       Date:  2001-10

5.  Weak protein-protein interactions in lectins: the crystal structure of a vegetative lectin from the legume Dolichos biflorus.

Authors:  L Buts; M H Dao-Thi; R Loris; L Wyns; M Etzler; T Hamelryck
Journal:  J Mol Biol       Date:  2001-05-25       Impact factor: 5.469

6.  The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.

Authors:  Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

7.  An unusual carbohydrate binding site revealed by the structures of two Maackia amurensis lectins complexed with sialic acid-containing oligosaccharides.

Authors:  A Imberty; C Gautier; J Lescar; S Pérez; L Wyns; R Loris
Journal:  J Biol Chem       Date:  2000-06-09       Impact factor: 5.157

8.  Bauhinia purpurea agglutinin.

Authors:  T Osawa; T Irimura; T Kawaguchi
Journal:  Methods Enzymol       Date:  1978       Impact factor: 1.600

9.  Lectin from sainfoin (Onobrychis viciifolia scop.). Complete amino acid sequence.

Authors:  R N Kouchalakos; O J Bates; R A Bradshaw; K D Hapner
Journal:  Biochemistry       Date:  1984-04-10       Impact factor: 3.162

10.  High-resolution crystal structures of Erythrina cristagalli lectin in complex with lactose and 2'-alpha-L-fucosyllactose and correlation with thermodynamic binding data.

Authors:  Cecilia Svensson; Susann Teneberg; Carol L Nilsson; Anders Kjellberg; Frederick P Schwarz; Nathan Sharon; Ute Krengel
Journal:  J Mol Biol       Date:  2002-08-02       Impact factor: 5.469

View more
  15 in total

Review 1.  Insights into the quaternary association of proteins through structure graphs: a case study of lectins.

Authors:  K V Brinda; Avadhesha Surolia; Sarawathi Vishveshwara
Journal:  Biochem J       Date:  2005-10-01       Impact factor: 3.857

2.  New crystal forms of Diocleinae lectins in the presence of different dimannosides.

Authors:  Frederico Bruno Mendes Batista Moreno; Gustavo Arruda Bezerra; Taianá Maia de Oliveira; Emmanuel Prata de Souza; Bruno Anderson Matias da Rocha; Raquel Guimarães Benevides; Plínio Delatorre; Benildo Sousa Cavada; Walter Filgueira de Azevedo
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-10-20

3.  Crystallization and preliminary X-ray analysis of the Man(alpha1-2)Man-specific lectin from Bowringia mildbraedii in complex with its carbohydrate ligand.

Authors:  Abel Garcia-Pino; Remy Loris; Lode Wyns; Lieven Buts
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-09-30

4.  An automated approach to network features of protein structure ensembles.

Authors:  Moitrayee Bhattacharyya; Chanda R Bhat; Saraswathi Vishveshwara
Journal:  Protein Sci       Date:  2013-10       Impact factor: 6.725

5.  Structure of a tetrameric galectin from Cinachyrella sp. (ball sponge).

Authors:  Douglas M Freymann; Yuka Nakamura; Pamela J Focia; Ryuichi Sakai; Geoffrey T Swanson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-08-18

6.  Crystallization and preliminary X-ray diffraction analysis of an anti-H(O) lectin from Lotus tetragonolobus seeds.

Authors:  Frederico Bruno Mendes Batista Moreno; Daiana Evelin Martil; Benildo Sousa Cavada; Walter Filgueira de Azevedo
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-06-26

7.  Analysis and prediction of cancerlectins using evolutionary and domain information.

Authors:  Ravi Kumar; Bharat Panwar; Jagat S Chauhan; Gajendra Ps Raghava
Journal:  BMC Res Notes       Date:  2011-07-20

8.  Cloning, Characterization, Expression Analysis, and Agglutination Studies of Novel Gene Encoding β-D-Galactose, N-Acetyl-D-Glucosamine and Lactose-Binding Lectin from Rice Bean (Vigna umbellata).

Authors:  Ankur Tripathi; Vipin Hallan; Rajan Katoch
Journal:  Mol Biotechnol       Date:  2021-10-05       Impact factor: 2.695

9.  Elucidation of the conformational free energy landscape in H.pylori LuxS and its implications to catalysis.

Authors:  Moitrayee Bhattacharyya; Saraswathi Vishveshwara
Journal:  BMC Struct Biol       Date:  2010-08-12

10.  Camptosemin, a tetrameric lectin of Camptosema ellipticum: structural and functional analysis.

Authors:  Fernanda A H Batista; Leandro S Goto; Wanius Garcia; Derminda I de Moraes; Mario de Oliveira Neto; Igor Polikarpov; Marcia R Cominetti; Heloísa S Selistre-de-Araújo; Leila M Beltramini; Ana Paula Ulian Araújo
Journal:  Eur Biophys J       Date:  2010-01-03       Impact factor: 1.733

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.