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Literature DB >> 15215469

ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval.

Jeff Reneker¹, Chi-Ren Shyu, Peiyu Zeng, Joseph C Polacco, Walter Gassmann.

Abstract

We have developed a web server for the life sciences community to use to search for short repeats of DNA sequence of length between 3 and 10,000 bases within multiple species. This search employs a unique and fast hash function approach. Our system also applies information retrieval algorithms to discover knowledge of cross-species conservation of repeat sequences. Furthermore, we have incorporated a part of the Gene Ontology database into our information retrieval algorithms to broaden the coverage of the search. Our web server and tutorial can be found at http://acmes.rnet.missouri.edu.

Mesh：

Year: 2004 PMID： 15215469 PMCID： PMC441593 DOI： 10.1093/nar/gkh455

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

11 in total

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Authors: N Ogawa; J DeRisi; P O Brown
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6 in total

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6 in total