Literature DB >> 15215463

FAN: fingerprint analysis of nucleotide sequences.

Neil Maudling1, Teresa K Attwood.   

Abstract

FAN is a server for fingerprint analysis of nucleotide sequences. The server performs a search of submitted nucleotide sequences against the PRINTS database. Searches are performed directly against fingerprints using a codon position specific score matrix (PSSM) approach. The advantages of this approach are increased specificity for coding sequence (CDS) over non-CDS, and increased tolerance to base-substituting and frameshifting sequence errors. Furthermore, there is no need for prior translation of the nucleotide sequences. A web-based interface to the software is available at http://bioinf.man.ac.uk/cgi-bin/neil/ntfront.pl.

Entities:  

Mesh：

Substances：

Year:  2004        PMID： 15215463      PMCID： PMC441595          DOI： 10.1093/nar/gkh457

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  8 in total

1.  Increased coverage of protein families with the blocks database servers.

Authors:  J G Henikoff; E A Greene; S Pietrokovski; S Henikoff
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  An assessment of gene prediction accuracy in large DNA sequences.

Authors:  R Guigó; P Agarwal; J F Abril; M Burset; J W Fickett
Journal:  Genome Res       Date:  2000-10       Impact factor: 9.043

3.  Assessment of the total number of human transcription units.

Authors:  M Das; C B Burge; E Park; J Colinas; J Pelletier
Journal:  Genomics       Date:  2001-09       Impact factor: 5.736

4.  PRINTS and its automatic supplement, prePRINTS.

Authors:  T K Attwood; P Bradley; D R Flower; A Gaulton; N Maudling; A L Mitchell; G Moulton; A Nordle; K Paine; P Taylor; A Uddin; C Zygouri
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  Amino acid substitution matrices from protein blocks.

Authors:  S Henikoff; J G Henikoff
Journal:  Proc Natl Acad Sci U S A       Date:  1992-11-15       Impact factor: 11.205

6.  Approximations to profile score distributions.

Authors:  L Goldstein; M S Waterman
Journal:  J Comput Biol       Date:  1994       Impact factor: 1.479

Review 7.  Computational methods for the identification of genes in vertebrate genomic sequences.

Authors:  J M Claverie
Journal:  Hum Mol Genet       Date:  1997       Impact factor: 6.150

8.  Score distributions for simultaneous matching to multiple motifs.

Authors:  T L Bailey; M Gribskov
Journal:  J Comput Biol       Date:  1997       Impact factor: 1.479
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.