Literature DB >> 15214425

Analysis and interpretation of data from real-time PCR trace detection methods using quantitation of GM soya as a model system.

Malcolm J Burns1, Hernan Valdivia, Neil Harris.   

Abstract

Recent years have seen an increased interest in DNA trace detection methods involved in many areas of bioanalytical research, such as quantitation of genetically modified (GM) ingredients in food products. There is little in the way of standardisation of data handling from these methods, and the data generated needs to be analysed appropriately if the results are to be interpreted correctly. This paper describes particular aspects of real-time PCR trace detection methods in order to increase the understanding of data generated using this bioanalytical technique. Using the specific example of GM soya detection and quantitation, it focuses on the production of calibration curves based on the mean and individual data values, the interpretation of correlation coefficients, regression techniques, and discusses suitable data analysis arising from simple and more complex experimental designs following transformation. By using the approaches outlined in this paper, more accurate analysis of data from real-time PCR and GM trace detection methods could be achieved.

Mesh:

Year:  2004        PMID: 15214425     DOI: 10.1007/s00216-003-2441-9

Source DB:  PubMed          Journal:  Anal Bioanal Chem        ISSN: 1618-2642            Impact factor:   4.142


  5 in total

1.  Sensitive detection of multiple rotavirus genotypes with a single reverse transcription-real-time quantitative PCR assay.

Authors:  Ion Gutiérrez-Aguirre; Andrej Steyer; Jana Boben; Kristina Gruden; Mateja Poljsak-Prijatelj; Maja Ravnikar
Journal:  J Clin Microbiol       Date:  2008-06-04       Impact factor: 5.948

2.  Estimation of low quantity genes: a hierarchical model for analyzing censored quantitative real-time PCR data.

Authors:  Tim C Boyer; Tim Hanson; Randall S Singer
Journal:  PLoS One       Date:  2013-05-31       Impact factor: 3.240

3.  Real-time PCR machine system modeling and a systematic approach for the robust design of a real-time PCR-on-a-chip system.

Authors:  Da-Sheng Lee
Journal:  Sensors (Basel)       Date:  2010-01-19       Impact factor: 3.576

4.  Standardisation of data from real-time quantitative PCR methods - evaluation of outliers and comparison of calibration curves.

Authors:  Malcolm J Burns; Gavin J Nixon; Carole A Foy; Neil Harris
Journal:  BMC Biotechnol       Date:  2005-12-07       Impact factor: 2.563

5.  Critical points of DNA quantification by real-time PCR--effects of DNA extraction method and sample matrix on quantification of genetically modified organisms.

Authors:  Katarina Cankar; Dejan Stebih; Tanja Dreo; Jana Zel; Kristina Gruden
Journal:  BMC Biotechnol       Date:  2006-08-14       Impact factor: 2.563

  5 in total

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